MetaCyc Pathway: nucleoside and nucleotide degradation (archaea) in Shewanella oneidensis MR-1

Add experiment(s):


Purine-nucleoside phosphorylase:
adenosine + phosphate→α-D-ribose-1-phosphate + adenine (EC 2.4.2.1)
SO0092 (deoD-1)
SO1221 (deoD-2)
SO2719 (deoD-3)
SO4297
SO4467
cytidine + ATP→CMP + ADP + H+ (EC 2.7.1.213; 2.7.1.48)
SO2617 (udk)
UMP + phosphate→α-D-ribose 1,5-bisphosphate + uracil (EC 2.4.2.57)
No genes
AMP + phosphate→α-D-ribose 1,5-bisphosphate + adenine (EC 2.4.2.57)
No genes
Purine-nucleoside phosphorylase:
guanosine + phosphate→α-D-ribose-1-phosphate + guanine (EC 2.4.2.1; 2.4.2.15)
SO0092 (deoD-1)
SO1221 (deoD-2)
SO2719 (deoD-3)
SO4297
SO4467
Pyrimidine-nucleoside phosphorylase:
uridine + phosphate→α-D-ribose-1-phosphate + uracil (EC 2.4.2.2; 2.4.2.3)
SO1218 (deoA)
SO4133 (udp)
SO4297
SO4467
CMP + phosphate→α-D-ribose 1,5-bisphosphate + cytosine (EC 2.4.2.57)
No genes
α-D-ribose-1-phosphate + ADP→AMP + α-D-ribose 1,5-bisphosphate + H+ (EC 2.7.1.212)
No genes
α-D-ribose 1,5-bisphosphate→D-ribulose-1,5-bisphosphate (EC 5.3.1.29)
No genes
Ribulose-bisphosphate carboxylase (in reverse):
D-ribulose-1,5-bisphosphate + CO2 + H2O→2 3-phospho-D-glycerate + 2 H+ (EC 4.1.1.39)
No genes

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information