MetaCyc Pathway: photorespiration I in Shewanella oneidensis MR-1

D-ribulose-1,5-bisphosphate + dioxygen→2-phosphoglycolate + 3-phospho-D-glycerate + 2 H+

No genes

Phosphoglycolate phosphatase: 2-phosphoglycolate + H2O→glycolate + phosphate (EC 3.1.3.18)

SO0293 (gph)

SO2414

(S)-2-hydroxy-acid oxidase: glycolate + dioxygen→glyoxylate + hydrogen peroxide (EC 1.1.3.15)

SO2643

Glycine transaminase (in reverse): glyoxylate + L-glutamate→glycine + 2-oxoglutarate (EC 2.6.1.4)

No genes

Serine--glyoxylate transaminase: glyoxylate + L-serine→glycine + 3-hydroxypyruvate (EC 2.6.1.45)

SO4343

glycine + NAD+ + a tetrahydrofolate→a 5,10-methylenetetrahydrofolate + ammonium + CO2 + NADH (EC 1.4.1.27)

SO0426 (lpdA)

SO0779 (gcvT)

Glycerate dehydrogenase (in reverse): 3-hydroxypyruvate + NADH + H+→D-glycerate + NAD+ (EC 1.1.1.29)

SO3631 (hprA)

Glycerate kinase: D-glycerate + ATP→3-phospho-D-glycerate + ADP + H+ (EC 2.7.1.31)

SO0505

SO1770

SO4577

Glycine hydroxymethyltransferase (in reverse): glycine + a 5,10-methylenetetrahydrofolate + H2O→L-serine + a tetrahydrofolate (EC 2.1.2.1)

SO3471 (glyA)

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information