MetaCyc Pathway: L-arginine degradation V (arginine deiminase pathway) in Shewanella oneidensis MR-1
| Arginine deiminase: L-arginine + H2O→L-citrulline + ammonium (EC 3.5.3.6) |
| No genes |
| Ornithine carbamoyltransferase (in reverse): L-citrulline + H+ + phosphate→carbamoyl phosphate + L-ornithine (EC 2.1.3.3) |
| SO0277 (argF) |
| Carbamate kinase (in reverse): carbamoyl phosphate + ADP→carbamate + ATP (EC 2.7.2.2; 6.3.4.16; 6.3.5.5) |
| SO1141 (carA) |
| SO1142 (carB) |
| carbamate + 2 H+→CO2 + ammonium (spontaneous) (EC 3.5.1.110; 3.5.1.20; 3.5.1.54; 4.2.1.104) |
| No genes |
Links:
- Pathway details at MetaCyc
- Fitness data for 3 genes
- All MetaCyc pathways for Shewanella oneidensis MR-1
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information