MetaCyc Pathway: (5Z)-dodecenoate biosynthesis I in Herbaspirillum seropedicae SmR1

Add experiment(s):


3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxydecanoyl-[acp]→a (2E)-dec-2-enoyl-[acp] + H2O (EC 4.2.1.59)
HSERO_RS10930
Trans-2-decenoyl-[acyl-carrier-protein] isomerase:
a (2E)-dec-2-enoyl-[acp]→a (3Z)-dec-3-enoyl-[acp] (EC 5.3.3.14)
No genes
Beta-ketoacyl-acyl-carrier-protein synthase II:
a (3Z)-dec-3-enoyl-[acp] + a malonyl-[acp] + H+→a (5Z)-3-oxododec-5-enoyl-[acp] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41)
HSERO_RS09615
HSERO_RS18530
HSERO_RS18545
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a (5Z)-3-oxododec-5-enoyl-[acp] + NADPH + H+→a (3R,5Z)-3-hydroxydodec-5-enoyl-[acp] + NADP+ (EC 1.1.1.100)
HSERO_RS02535
HSERO_RS02915
HSERO_RS02925
HSERO_RS05240
HSERO_RS05340
HSERO_RS05565
HSERO_RS06350
HSERO_RS06765
HSERO_RS09605
HSERO_RS11255
HSERO_RS12955
HSERO_RS14075
HSERO_RS16605
HSERO_RS17460
HSERO_RS18540
HSERO_RS19050
HSERO_RS19055
HSERO_RS19455
HSERO_RS19730
HSERO_RS21730
HSERO_RS22305
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R,5Z)-3-hydroxydodec-5-enoyl-[acp]→a (2E,5Z)-dodeca-3,5-dienoyl-[acp] + H2O (EC 4.2.1.59)
HSERO_RS10930
Enoyl-[acyl-carrier-protein] reductase (NADH) (in reverse):
a (2E,5Z)-dodeca-3,5-dienoyl-[acp] + NADH + H+→a (5Z)-dodec-5-enoyl-[acp] + NAD+ (EC 1.3.1.9)
HSERO_RS12025
HSERO_RS17150
HSERO_RS17250
HSERO_RS17480

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information