MetaCyc Pathway: glucose degradation (oxidative) in Herbaspirillum seropedicae SmR1

Add experiment(s):


Quinoprotein glucose dehydrogenase:
D-glucopyranose[out] + a ubiquinone[pm-bac-neg]→D-glucono-1,5-lactone[out] + a ubiquinol[pm-bac-neg]
(EC 1.1.5.2)
No genes
Gluconolactonase:
D-glucono-1,5-lactone + H2O→D-gluconate + H+
(spontaneous) (EC 3.1.1.17)
HSERO_RS19370
HSERO_RS20090
HSERO_RS22265
Gluconate 2-dehydrogenase (acceptor):
D-gluconate + an oxidized electron carrier→2-keto-D-gluconate + a reduced two electron carrier
(EC 1.1.99.3)
HSERO_RS16735
HSERO_RS16740
HSERO_RS16745
HSERO_RS22380
HSERO_RS22385
HSERO_RS22390
HSERO_RS22800
HSERO_RS22805
HSERO_RS22810
Dehydrogluconokinase:
2-keto-D-gluconate + ATP→2-dehydro-6-phospho-D-gluconate + ADP + H+
(EC 2.7.1.13)
No genes
Phosphogluconate 2-dehydrogenase (in reverse):
2-dehydro-6-phospho-D-gluconate + NAD(P)H + H+→D-gluconate 6-phosphate + NAD(P)+
(EC 1.1.1.43)
HSERO_RS07550
HSERO_RS08110

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information