MetaCyc Pathway: gluconeogenesis III in Desulfovibrio vulgaris Hildenborough JW710

Add experiment(s):


Pyruvate carboxylase:
pyruvate + ATP + hydrogen carbonate→oxaloacetate + ADP + H+ + phosphate (EC 6.4.1.1)
DVU1834 (pyc)
Malate dehydrogenase:
(S)-malate + NAD+→oxaloacetate + NADH + H+ (EC 1.1.1.37; 1.1.1.38)
No genes
Phosphoenolpyruvate carboxykinase (GTP):
oxaloacetate + GTP→phosphoenolpyruvate + CO2 + GDP (EC 4.1.1.32)
No genes
Phosphopyruvate hydratase (in reverse):
phosphoenolpyruvate + H2O→2-phospho-D-glycerate (EC 4.2.1.11)
DVU0322 (eno)
2-phospho-D-glycerate→3-phospho-D-glycerate (EC 5.4.2.11)
DVU2935 (gpm)
Phosphoglycerate kinase:
3-phospho-D-glycerate + ATP→3-phospho-D-glyceroyl phosphate + ADP (EC 2.7.2.3)
DVU2529 (pgk)
Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (in reverse):
3-phospho-D-glyceroyl phosphate + NADH + H+→D-glyceraldehyde 3-phosphate + NAD+ + phosphate (EC 1.2.1.12)
DVU2144 (gap-2)
DVU0565 (gap-1)
Triose-phosphate isomerase:
D-glyceraldehyde 3-phosphate→glycerone phosphate (EC 5.3.1.1)
DVU1677 (tpiA)
Fructose-bisphosphate aldolase (in reverse):
glycerone phosphate + D-glyceraldehyde 3-phosphate→β-D-fructofuranose 1,6-bisphosphate (EC 4.1.2.13)
DVU2143 (fba)
DVU0460
Fructose-bisphosphatase:
β-D-fructofuranose 1,6-bisphosphate + H2O→β-D-fructofuranose 6-phosphate + phosphate (EC 3.1.3.11)
DVU1841 (fbp)
DVU1539 (glpX)
Glucose-6-phosphate isomerase (in reverse):
β-D-fructofuranose 6-phosphate→α-D-glucose 6-phosphate (EC 5.3.1.9)
DVU3222 (pgi)
Sugar-terminal-phosphatase:
D-glucopyranose 6-phosphate + H2O→D-glucopyranose + phosphate (EC 3.1.3.58; 3.1.3.9)
No genes

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information