MetaCyc Pathway: photorespiration III in Dinoroseobacter shibae DFL-12

D-ribulose-1,5-bisphosphate + dioxygen→2-phosphoglycolate + 3-phospho-D-glycerate + 2 H+

No genes

Phosphoglycolate phosphatase: 2-phosphoglycolate + H2O→glycolate + phosphate (EC 3.1.3.18)

Dshi_0316

Dshi_1295

Dshi_2760

Dshi_2818

Glycolate dehydrogenase: glycolate[in] + an electron-transfer quinone→glyoxylate[in] + an electron-transfer quinol (EC 1.1.99.14)

Dshi_2894

Dshi_2895

Dshi_2896

Dshi_3324

Glycine transaminase (in reverse): glyoxylate + L-glutamate→glycine + 2-oxoglutarate (EC 2.6.1.4)

No genes

Serine--glyoxylate transaminase: glyoxylate + L-serine→glycine + 3-hydroxypyruvate (EC 2.6.1.45)

Dshi_0887

Dshi_2090

Dshi_2489

Dshi_3325

glycine + NAD+ + a tetrahydrofolate→a 5,10-methylenetetrahydrofolate + ammonium + CO2 + NADH (EC 1.4.1.27)

Dshi_2886

Glycerate dehydrogenase (in reverse): 3-hydroxypyruvate + NADH + H+→D-glycerate + NAD+ (EC 1.1.1.29)

Dshi_2970

Dshi_3318

Glycerate kinase: D-glycerate + ATP→3-phospho-D-glycerate + ADP + H+ (EC 2.7.1.31)

Dshi_3046

Glycine hydroxymethyltransferase (in reverse): glycine + a 5,10-methylenetetrahydrofolate + H2O→L-serine + a tetrahydrofolate (EC 2.1.2.1)

Dshi_0821

Dshi_2113

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information