MetaCyc Pathway: indole-3-acetate biosynthesis III (bacteria) in Dinoroseobacter shibae DFL-12
| Tryptophan 2-monooxygenase: L-tryptophan + dioxygen→(indol-3-yl)acetamide + CO2 + H2O (EC 1.13.12.3) |
| Dshi |
| Amidase: (indol-3-yl)acetamide + H2O→(indol-3-yl)acetate + ammonium (EC 3.5.1.4) |
| Dshi |
Links:
- Pathway details at MetaCyc
- Fitness data for 2 genes
- All MetaCyc pathways for Dinoroseobacter shibae DFL-12
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information