MetaCyc Pathway: streptorubin B biosynthesis in Paraburkholderia bryophila 376MFSha3.1

Add experiment(s):


Beta-ketoacyl-acyl-carrier-protein synthase III:
acetyl-CoA + a malonyl-[acp] + H+→an acetoacetyl-[acp] + CO2 + coenzyme A (EC 2.3.1.180)
H281DRAFT_04349
L-proline + ATP + a holo-[RedO prolyl-carrier protein]→an L-prolyl-[RedO prolyl-carrier protein] + AMP + diphosphate + H+ (EC 6.2.1.53)
No genes
malonyl-CoA + a holo-[RedN acyl-carrier protein/polyketide synthase]→a malonyl-[RedN] + coenzyme A
No genes
malonyl-CoA + a RedL polyketide synthase→a malonyl-[RedL polyketide synthase] + coenzyme A
No genes
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
an acetoacetyl-[acp] + NADPH + H+→a (3R)-3-hydroxybutanoyl-[acp] + NADP+ (EC 1.1.1.100)
H281DRAFT_00212
H281DRAFT_00643
H281DRAFT_00677
H281DRAFT_00796
H281DRAFT_01019
H281DRAFT_01131
H281DRAFT_01188
H281DRAFT_01230
H281DRAFT_01561
H281DRAFT_01659
H281DRAFT_01729
H281DRAFT_01811
H281DRAFT_02429
H281DRAFT_02507
H281DRAFT_02561
H281DRAFT_02581
H281DRAFT_03080
H281DRAFT_03241
H281DRAFT_03637
H281DRAFT_03641
H281DRAFT_03712
H281DRAFT_03713
H281DRAFT_03748
H281DRAFT_03856
H281DRAFT_03972
H281DRAFT_04114
H281DRAFT_04145
H281DRAFT_04351
H281DRAFT_04524
H281DRAFT_04910
H281DRAFT_05132
H281DRAFT_05459
H281DRAFT_05476
H281DRAFT_05497
H281DRAFT_05552
H281DRAFT_05556
H281DRAFT_05863
H281DRAFT_06109
H281DRAFT_06110
H281DRAFT_06296
H281DRAFT_06377
H281DRAFT_06505
H281DRAFT_06506
H281DRAFT_06507
H281DRAFT_06578
an L-prolyl-[RedO prolyl-carrier protein] + 2 an oxidized electron-transfer flavoprotein + 2 H+→a 1H-pyrrole-2-carbonyl-[RedO prolyl-carrier protein] + 2 a reduced electron-transfer flavoprotein (EC 1.3.8.14)
No genes
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxybutanoyl-[acp]→a (2E)-but-2-enoyl-[acp] + H2O (EC 4.2.1.59)
H281DRAFT_00621
H281DRAFT_02426
H281DRAFT_06622
a 1H-pyrrole-2-carbonyl-[RedO prolyl-carrier protein] + a [RedX protein]-L-cysteine→a [RedX acyl-carrier protein]-(1H-pyrrole-2-carbonyl)-L-cysteine + a holo-[RedO prolyl-carrier protein]
No genes
Enoyl-[acyl-carrier-protein] reductase (NADH) (in reverse):
a (2E)-but-2-enoyl-[acp] + NADH + H+→a butanoyl-[acp] + NAD+ (EC 1.3.1.9)
H281DRAFT_00003
H281DRAFT_02163
a [RedX acyl-carrier protein]-(1H-pyrrole-2-carbonyl)-L-cysteine + a malonyl-[RedN] + H+→a 3-oxo-3-(1H-pyrrol-2-yl)propanoyl-[RedN] + CO2 + a [RedX protein]-L-cysteine
No genes
Beta-ketoacyl-acyl-carrier-protein synthase II:
a butanoyl-[acp] + a malonyl-[acp] + H+→a 3-oxohexanoyl-[acp] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41)
H281DRAFT_03970
H281DRAFT_03971
H281DRAFT_03974
H281DRAFT_04353
a 3-oxo-3-(1H-pyrrol-2-yl)propanoyl-[RedN] + L-serine→4-hydroxy-2,2'-bipyrrole-5-methanol + CO2 + a holo-[RedN acyl-carrier protein/polyketide synthase] + H2O
No genes
4-hydroxy-2,2'-bipyrrole-5-methanol + NAD(P)+→4-hydroxy-2,2'-bipyrrole-5-carbaldehyde + NAD(P)H + H+
No genes
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a 3-oxohexanoyl-[acp] + NADPH + H+→a (3R)-3-hydroxyhexanoyl-[acp] + NADP+ (EC 1.1.1.100)
H281DRAFT_00212
H281DRAFT_00643
H281DRAFT_00677
H281DRAFT_00796
H281DRAFT_01019
H281DRAFT_01131
H281DRAFT_01188
H281DRAFT_01230
H281DRAFT_01561
H281DRAFT_01659
H281DRAFT_01729
H281DRAFT_01811
H281DRAFT_02429
H281DRAFT_02507
H281DRAFT_02561
H281DRAFT_02581
H281DRAFT_03080
H281DRAFT_03241
H281DRAFT_03637
H281DRAFT_03641
H281DRAFT_03712
H281DRAFT_03713
H281DRAFT_03748
H281DRAFT_03856
H281DRAFT_03972
H281DRAFT_04114
H281DRAFT_04145
H281DRAFT_04351
H281DRAFT_04524
H281DRAFT_04910
H281DRAFT_05132
H281DRAFT_05459
H281DRAFT_05476
H281DRAFT_05497
H281DRAFT_05552
H281DRAFT_05556
H281DRAFT_05863
H281DRAFT_06109
H281DRAFT_06110
H281DRAFT_06296
H281DRAFT_06377
H281DRAFT_06505
H281DRAFT_06506
H281DRAFT_06507
H281DRAFT_06578
4-hydroxy-2,2'-bipyrrole-5-carbaldehyde + S-adenosyl-L-methionine→4-methoxy-2,2'-bipyrrole-5-carbaldehyde + S-adenosyl-L-homocysteine + H+
No genes
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxyhexanoyl-[acp]→a (2E)-hex-2-enoyl-[acp] + H2O (EC 4.2.1.59)
H281DRAFT_00621
H281DRAFT_02426
H281DRAFT_06622
Enoyl-[acyl-carrier-protein] reductase (NADH) (in reverse):
a (2E)-hex-2-enoyl-[acp] + NADH + H+→a hexanoyl-[acp] + NAD+ (EC 1.3.1.9)
H281DRAFT_00003
H281DRAFT_02163
Beta-ketoacyl-acyl-carrier-protein synthase II:
a hexanoyl-[acp] + a malonyl-[acp] + H+→a 3-oxooctanoyl-[acp] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41)
H281DRAFT_03970
H281DRAFT_03971
H281DRAFT_03974
H281DRAFT_04353
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a 3-oxooctanoyl-[acp] + NADPH + H+→a (3R)-3-hydroxyoctanoyl-[acp] + NADP+ (EC 1.1.1.100)
H281DRAFT_00212
H281DRAFT_00643
H281DRAFT_00677
H281DRAFT_00796
H281DRAFT_01019
H281DRAFT_01131
H281DRAFT_01188
H281DRAFT_01230
H281DRAFT_01561
H281DRAFT_01659
H281DRAFT_01729
H281DRAFT_01811
H281DRAFT_02429
H281DRAFT_02507
H281DRAFT_02561
H281DRAFT_02581
H281DRAFT_03080
H281DRAFT_03241
H281DRAFT_03637
H281DRAFT_03641
H281DRAFT_03712
H281DRAFT_03713
H281DRAFT_03748
H281DRAFT_03856
H281DRAFT_03972
H281DRAFT_04114
H281DRAFT_04145
H281DRAFT_04351
H281DRAFT_04524
H281DRAFT_04910
H281DRAFT_05132
H281DRAFT_05459
H281DRAFT_05476
H281DRAFT_05497
H281DRAFT_05552
H281DRAFT_05556
H281DRAFT_05863
H281DRAFT_06109
H281DRAFT_06110
H281DRAFT_06296
H281DRAFT_06377
H281DRAFT_06505
H281DRAFT_06506
H281DRAFT_06507
H281DRAFT_06578
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxyoctanoyl-[acp]→a (2E)-oct-2-enoyl-[acp] + H2O (EC 4.2.1.59)
H281DRAFT_00621
H281DRAFT_02426
H281DRAFT_06622
Enoyl-[acyl-carrier-protein] reductase (NADH) (in reverse):
a (2E)-oct-2-enoyl-[acp] + NADH + H+→an octanoyl-[acp] + NAD+ (EC 1.3.1.9)
H281DRAFT_00003
H281DRAFT_02163
Beta-ketoacyl-acyl-carrier-protein synthase II:
an octanoyl-[acp] + a malonyl-[acp] + H+→a 3-oxodecanoyl-[acp] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41)
H281DRAFT_03970
H281DRAFT_03971
H281DRAFT_03974
H281DRAFT_04353
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a 3-oxodecanoyl-[acp] + NADPH + H+→a (3R)-3-hydroxydecanoyl-[acp] + NADP+ (EC 1.1.1.100)
H281DRAFT_00212
H281DRAFT_00643
H281DRAFT_00677
H281DRAFT_00796
H281DRAFT_01019
H281DRAFT_01131
H281DRAFT_01188
H281DRAFT_01230
H281DRAFT_01561
H281DRAFT_01659
H281DRAFT_01729
H281DRAFT_01811
H281DRAFT_02429
H281DRAFT_02507
H281DRAFT_02561
H281DRAFT_02581
H281DRAFT_03080
H281DRAFT_03241
H281DRAFT_03637
H281DRAFT_03641
H281DRAFT_03712
H281DRAFT_03713
H281DRAFT_03748
H281DRAFT_03856
H281DRAFT_03972
H281DRAFT_04114
H281DRAFT_04145
H281DRAFT_04351
H281DRAFT_04524
H281DRAFT_04910
H281DRAFT_05132
H281DRAFT_05459
H281DRAFT_05476
H281DRAFT_05497
H281DRAFT_05552
H281DRAFT_05556
H281DRAFT_05863
H281DRAFT_06109
H281DRAFT_06110
H281DRAFT_06296
H281DRAFT_06377
H281DRAFT_06505
H281DRAFT_06506
H281DRAFT_06507
H281DRAFT_06578
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxydecanoyl-[acp]→a (2E)-dec-2-enoyl-[acp] + H2O (EC 4.2.1.59)
H281DRAFT_00621
H281DRAFT_02426
H281DRAFT_06622
Enoyl-[acyl-carrier-protein] reductase (NADH) (in reverse):
a (2E)-dec-2-enoyl-[acp] + NADH + H+→a decanoyl-[acp] + NAD+ (EC 1.3.1.9)
H281DRAFT_00003
H281DRAFT_02163
Beta-ketoacyl-acyl-carrier-protein synthase II:
a decanoyl-[acp] + a malonyl-[acp] + H+→a 3-oxododecanoyl-[acp] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41)
H281DRAFT_03970
H281DRAFT_03971
H281DRAFT_03974
H281DRAFT_04353
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a 3-oxododecanoyl-[acp] + NADPH + H+→a (3R)-3-hydroxydodecanoyl-[acp] + NADP+ (EC 1.1.1.100)
H281DRAFT_00212
H281DRAFT_00643
H281DRAFT_00677
H281DRAFT_00796
H281DRAFT_01019
H281DRAFT_01131
H281DRAFT_01188
H281DRAFT_01230
H281DRAFT_01561
H281DRAFT_01659
H281DRAFT_01729
H281DRAFT_01811
H281DRAFT_02429
H281DRAFT_02507
H281DRAFT_02561
H281DRAFT_02581
H281DRAFT_03080
H281DRAFT_03241
H281DRAFT_03637
H281DRAFT_03641
H281DRAFT_03712
H281DRAFT_03713
H281DRAFT_03748
H281DRAFT_03856
H281DRAFT_03972
H281DRAFT_04114
H281DRAFT_04145
H281DRAFT_04351
H281DRAFT_04524
H281DRAFT_04910
H281DRAFT_05132
H281DRAFT_05459
H281DRAFT_05476
H281DRAFT_05497
H281DRAFT_05552
H281DRAFT_05556
H281DRAFT_05863
H281DRAFT_06109
H281DRAFT_06110
H281DRAFT_06296
H281DRAFT_06377
H281DRAFT_06505
H281DRAFT_06506
H281DRAFT_06507
H281DRAFT_06578
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxydodecanoyl-[acp]→a (2E)-dodec-2-enoyl-[acp] + H2O (EC 4.2.1.59)
H281DRAFT_00621
H281DRAFT_02426
H281DRAFT_06622
Enoyl-[acyl-carrier-protein] reductase (NADH) (in reverse):
a (2E)-dodec-2-enoyl-[acp] + NADH + H+→a dodecanoyl-[acp] + NAD+ (EC 1.3.1.9)
H281DRAFT_00003
H281DRAFT_02163
a malonyl-[RedL polyketide synthase] + a dodecanoyl-[RedQ acyl-carrier protein] + H+→a 3-oxotetradecanoyl-[RedL polyketide synthase] + CO2 + a holo-[RedQ acyl-carrier protein]
No genes
a 3-oxotetradecanoyl-[RedL polyketide synthase] + glycine→5-undecyl-1,2-dihydropyrrol-3-one + CO2 + a RedL polyketide synthase + H2O
No genes
5-undecyl-1,2-dihydropyrrol-3-one + NAD(P)H + H+→2-undecylpyrrole + NAD(P)+ + H2O
No genes
4-methoxy-2,2'-bipyrrole-5-carbaldehyde + 2-undecylpyrrole + ATP→undecylprodigiosin + ADP + H+ + phosphate
No genes
undecylprodigiosin + a reduced two electron carrier + dioxygen→streptorubin B + an oxidized electron carrier + 2 H2O
No genes

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information