MetaCyc Pathway: 3-methyl-branched fatty acid α-oxidation in Burkholderia phytofirmans PsJN

Add experiment(s):


Long-chain-fatty-acid--CoA ligase:
a 3-methyl-branched 2,3,4-saturated fatty acid + ATP + coenzyme A→a 3-methyl-branched 2,3,4-saturated fatty acyl-CoA + AMP + diphosphate
(EC 6.2.1.3)
BPHYT_RS08270
BPHYT_RS17295
BPHYT_RS19375
a 3-methyl-branched 2,3,4-saturated fatty acyl-CoA + 2-oxoglutarate + dioxygen→a 2-hydroxy-3-methyl-branched 2,3,4-saturated fatty acyl-CoA + CO2 + succinate
No genes
a 2-hydroxy-3-methyl-branched 2,3,4-saturated fatty acyl-CoA→a 2-methyl branched 2,3,4-saturated fatty aldehyde + formyl-CoA (EC 4.1.2.63)
No genes
Formyl-CoA hydrolase:
formyl-CoA + H2O→formate + coenzyme A + H+
(EC 3.1.2.10)
No genes
Aldehyde dehydrogenase (NAD(+)):
a 2-methyl branched 2,3,4-saturated fatty aldehyde + NAD+ + H2O→a 2-methyl branched 2,3,4-saturated fatty acid + NADH + 2 H+
(EC 1.2.1.3)
BPHYT_RS00120
BPHYT_RS00395
BPHYT_RS05370
BPHYT_RS07490
BPHYT_RS09900
BPHYT_RS17340
BPHYT_RS18745
BPHYT_RS19710
BPHYT_RS20795
BPHYT_RS25705
BPHYT_RS25810
BPHYT_RS27405
BPHYT_RS28770
BPHYT_RS29875
BPHYT_RS30510
BPHYT_RS32650
BPHYT_RS34980
BPHYT_RS35600
Long-chain-fatty-acid--CoA ligase:
a 2-methyl branched 2,3,4-saturated fatty acid + ATP + coenzyme A→a 2-methyl branched 2,3,4-saturated fatty acyl-CoA + AMP + diphosphate
(EC 6.2.1.3)
BPHYT_RS08270
BPHYT_RS17295
BPHYT_RS19375

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information