MetaCyc Pathway: fatty acid β-oxidation IV (unsaturated, even number) in Burkholderia phytofirmans PsJN

Add experiment(s):


3-hydroxybutyryl-CoA epimerase:
a 2,3,4-saturated (3R)-3-hydroxyacyl-CoA→a 2,3,4-saturated (3S)-3-hydroxyacyl-CoA
(EC 5.1.2.3)
BPHYT_RS09560
BPHYT_RS13545
a (2E,4Z)-2,4-dienoyl-CoA + NADPH + H+→a (3E)-3-enoyl-CoA + NADP+ (EC 1.3.1.124)
No genes
a 2,3,4-saturated (3R)-3-hydroxyacyl-CoA→a (2E)-2-enoyl-CoA + H2O (EC 4.2.1.119)
No genes
Dodecenoyl-CoA isomerase:
a (3E)-3-enoyl-CoA→a (2E)-2-enoyl-CoA
(EC 5.3.3.8)
BPHYT_RS03225
BPHYT_RS09560
BPHYT_RS13545
Enoyl-CoA hydratase (in reverse):
a (2E)-2-enoyl-CoA + H2O→a 2,3,4-saturated (3S)-3-hydroxyacyl-CoA
(EC 4.2.1.17)
BPHYT_RS02345
BPHYT_RS03225
BPHYT_RS03235
BPHYT_RS03825
BPHYT_RS06755
BPHYT_RS06760
BPHYT_RS08375
BPHYT_RS08630
BPHYT_RS09560
BPHYT_RS10815
BPHYT_RS11780
BPHYT_RS13345
BPHYT_RS13545
BPHYT_RS14830
BPHYT_RS17335
BPHYT_RS17350
BPHYT_RS20025
BPHYT_RS25360
BPHYT_RS25695
BPHYT_RS27105
BPHYT_RS27895
BPHYT_RS28015
BPHYT_RS28020
BPHYT_RS28620
BPHYT_RS35465

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information