MetaCyc Pathway: glyoxylate cycle in Burkholderia phytofirmans PsJN

Add experiment(s):


Aconitate hydratase:
citrate→cis-aconitate + H2O (EC 4.2.1.3)
BPHYT_RS10160
BPHYT_RS30145
BPHYT_RS33980
Aconitate hydratase:
cis-aconitate + H2O→D-threo-isocitrate (EC 4.2.1.3)
BPHYT_RS10160
BPHYT_RS30145
BPHYT_RS33980
Isocitrate lyase:
D-threo-isocitrate→glyoxylate + succinate (EC 4.1.3.1)
BPHYT_RS12285
BPHYT_RS25670
Malate synthase:
glyoxylate + acetyl-CoA + H2O→(S)-malate + coenzyme A + H+ (EC 2.3.3.9)
BPHYT_RS09815
BPHYT_RS12305
BPHYT_RS31665
Malate dehydrogenase:
(S)-malate + NAD+→oxaloacetate + NADH + H+ (EC 1.1.1.37; 1.1.1.38)
BPHYT_RS27110
BPHYT_RS28460
BPHYT_RS33955
Citrate (Si)-synthase:
acetyl-CoA + oxaloacetate + H2O→citrate + coenzyme A + H+ (EC 2.3.3.1; 2.3.3.16; 2.3.3.3)
BPHYT_RS15810
BPHYT_RS19980
BPHYT_RS20940
BPHYT_RS27440
BPHYT_RS33920

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information