MetaCyc Pathway: superpathway of glyoxylate bypass and TCA in Enterobacter sp. TBS_079

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Reactions and Genes L-Phenylalanine (C)
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2-oxoglutarate + coenzyme A + NAD+→succinyl-CoA + CO2 + NADH (EC 1.2.1.105)
MPMX20_00809 N.D.
Succinate--CoA ligase (ADP-forming) (in reverse):
succinyl-CoA + ADP + phosphate→succinate + ATP + coenzyme A
(EC 6.2.1.5)
MPMX20_01356 -1.7
MPMX20_01357 -1.2
Succinate dehydrogenase (ubiquinone):
succinate[in] + an electron-transfer quinone→fumarate[in] + an electron-transfer quinol
(EC 1.3.5.1)
No genes
Fumarate hydratase (in reverse):
fumarate + H2O→(S)-malate
(EC 4.2.1.2)
MPMX20_01958 +0.6
MPMX20_02021 -0.2
MPMX20_02022 -0.0
MPMX20_02966 +0.2
Malate dehydrogenase:
(S)-malate + NAD+→oxaloacetate + NADH + H+
(EC 1.1.1.37; 1.1.1.38)
MPMX20_02369 +0.2
MPMX20_04140 -3.2
(S)-malate[in] + an electron-transfer quinone→oxaloacetate[in] + an electron-transfer quinol (EC 1.1.5.4)
MPMX20_03168 -0.0
Citrate (Si)-synthase:
oxaloacetate + acetyl-CoA + H2O→citrate + coenzyme A + H+
(EC 2.3.3.1; 2.3.3.16; 2.3.3.3)
MPMX20_01349 -3.7
Aconitate hydratase:
citrate→cis-aconitate + H2O
(EC 4.2.1.3)
MPMX20_00812 -0.7
MPMX20_02499 -0.1
Aconitate hydratase:
cis-aconitate + H2O→D-threo-isocitrate
(EC 4.2.1.3)
MPMX20_00812 -0.7
MPMX20_02499 -0.1
Isocitrate lyase:
D-threo-isocitrate→succinate + glyoxylate
(EC 4.1.3.1)
MPMX20_00232 -2.2
Isocitrate dehydrogenase (NADP(+)):
D-threo-isocitrate + NADP+→2-oxoglutarate + CO2 + NADPH
(EC 1.1.1.42)
MPMX20_01820 N.D.
Malate synthase:
acetyl-CoA + glyoxylate + H2O→(S)-malate + coenzyme A + H+
(EC 2.3.3.9)
MPMX20_00231 -2.7

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information