| Reactions and Genes | Protocatechuic Acid (C) |
|---|
| remove |
| a 2,3,4-saturated fatty acid + ATP + coenzyme A→a 2,3,4-saturated fatty acyl CoA + AMP + diphosphate |
| No genes |
Dodecenoyl-CoA isomerase:
a (3Z)-3-enoyl-CoA→a (2E)-2-enoyl-CoA (EC 5.3.3.8) |
| SM_b21632 | +0.1 |
3-hydroxybutyryl-CoA epimerase:
a 2,3,4-saturated (3R)-3-hydroxyacyl-CoA→a 2,3,4-saturated (3S)-3-hydroxyacyl-CoA (EC 5.1.2.3) |
| SM_b21632 | +0.1 |
| SMc02227 | -0.7 |
| a 2,3,4-saturated fatty acyl CoA + an oxidized electron-transfer flavoprotein + H+→a (2E)-2-enoyl-CoA + a reduced electron-transfer flavoprotein |
| No genes |
Enoyl-CoA hydratase (in reverse):
a (2E)-2-enoyl-CoA + H2O→a 2,3,4-saturated (3S)-3-hydroxyacyl-CoA (EC 4.2.1.17) |
| SM_b20752 | +0.1 |
| SM_b21632 | +0.1 |
| SM_b21633 | +0.2 |
| SMa1408 | -0.0 |
| SMc00976 | -0.5 |
| SMc01153 | +0.1 |
| SMc01638 | +0.0 |
| SMc01641 | +0.8 |
| SMc01669 | +0.1 |
| SMc01806 | +0.2 |
| SMc02227 | -0.7 |
| SMc04398 | N.D. |
3-hydroxyacyl-CoA dehydrogenase:
a 2,3,4-saturated (3S)-3-hydroxyacyl-CoA + NAD+→a 2,3,4-saturated 3-oxoacyl-CoA + NADH + H+ (EC 1.1.1.35) |
| SM_b21632 | +0.1 |
| SMc01638 | +0.0 |
| SMc02227 | -0.7 |
Acetyl-CoA C-acyltransferase (in reverse):
a 2,3,4-saturated 3-oxoacyl-CoA + coenzyme A→a 2,3,4-saturated fatty acyl CoA + acetyl-CoA (EC 2.3.1.16) |
| SM_b20589 | -5.0 |
| SMa1450 | +0.0 |
| SMc00262 | -0.1 |
| SMc00966 | -0.2 |
| SMc02228 | -0.9 |
| SMc03879 | -0.5 |
Links:
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information