MetaCyc Pathway: 2-deoxy-D-ribose degradation II in Pseudomonas syringae pv. syringae B728a

Add experiment(s):


Reactions and Genes KB with Plumbagin 10 mM
remove
2-deoxy-β-D-ribopyranose + 2 an oxidized c-type cytochrome→2-deoxy-ribono-1,5-lactone + 2 a reduced c-type cytochrome + 2 H+ (EC 1.1.2.M2)
No genes
2-deoxy-ribono-1,5-lactone + H2O→2-deoxy-D-ribonate + H+
Psyr_2186 +0.2
2-deoxy-D-ribonate + NAD+→2-deoxy-3-dehydro-D-ribonate + NADH + H+ (EC 1.1.1.M55)
Psyr_2184 +0.5
2-deoxy-3-dehydro-D-ribonate + acetyl-CoA→acetoacetate + D-glyceroyl-CoA
Psyr_2185 -0.0
Acetoacetate--CoA ligase:
acetoacetate + ATP + coenzyme A→acetoacetyl-CoA + AMP + diphosphate (EC 6.2.1.16)
Psyr_3834 +1.1
Psyr_3836 +0.0
D-glyceroyl-CoA + H2O→D-glycerate + coenzyme A + H+
No genes
Acetyl-CoA C-acyltransferase (in reverse):
acetoacetyl-CoA + coenzyme A→2 acetyl-CoA (EC 2.3.1.16; 2.3.1.9)
Psyr_0645 +0.1
Psyr_0824 -0.1
Psyr_2725 -0.0
Psyr_3031 -0.3
Psyr_3289 -0.7
Psyr_4011 N.D.
D-glycerate + ATP→2-phospho-D-glycerate + ADP + H+ (EC 2.7.1.165)
Psyr_3115 -0.1

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information