MetaCyc Pathway: superpathway of allantoin degradation in plants in Pseudomonas fluorescens FW300-N2E2

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Reactions and Genes L-Phenylalanine (N)
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(S)-(+)-allantoin[out] + H+[out]→(S)-(+)-allantoin[in] + H+[in]
No genes
Allantoinase:
(S)-(+)-allantoin + H2O→allantoate + H+ (EC 3.5.2.5)
No genes
Allantoate deiminase:
allantoate + 2 H+ + H2O→(S)-ureidoglycine + ammonium + CO2 (EC 3.5.3.9)
No genes
Allantoicase:
allantoate + H2O→(S)-ureidoglycolate + urea (EC 3.5.3.4)
Pf6N2E2_5803 -0.4
(S)-ureidoglycine + H2O→(S)-ureidoglycolate + ammonium (EC 3.5.3.26)
No genes
(S)-ureidoglycolate + 2 H+ + H2O→glyoxylate + 2 ammonium + CO2 (EC 3.5.1.116)
Pf6N2E2_5802 +0.1
Ureidoglycolate lyase:
(S)-ureidoglycolate→glyoxylate + urea (EC 4.3.2.3)
Pf6N2E2_5802 +0.1
Urease:
urea + 2 H+ + H2O→2 ammonium + CO2 (EC 3.5.1.5)
Pf6N2E2_3552 -0.6
Pf6N2E2_3553 -2.2
Pf6N2E2_3556 -0.2
Pf6N2E2_3570 -0.1
Pf6N2E2_3571 +0.2
Pf6N2E2_3572 +0.1

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information