MetaCyc Pathway: glyoxylate cycle in Herbaspirillum seropedicae SmR1

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Reactions and Genes D-Glucose (C) with ammonium chloride; anaerobic; 3 days
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Aconitate hydratase:
citrate→cis-aconitate + H2O (EC 4.2.1.3)
HSERO_RS11425 N.D.
HSERO_RS14940 N.D.
Aconitate hydratase:
cis-aconitate + H2O→D-threo-isocitrate (EC 4.2.1.3)
HSERO_RS11425 N.D.
HSERO_RS14940 N.D.
Isocitrate lyase:
D-threo-isocitrate→glyoxylate + succinate (EC 4.1.3.1)
HSERO_RS10565 -1.6
Malate synthase:
glyoxylate + acetyl-CoA + H2O→(S)-malate + coenzyme A + H+ (EC 2.3.3.9)
HSERO_RS15200 N.D.
Malate dehydrogenase:
(S)-malate + NAD+→oxaloacetate + NADH + H+ (EC 1.1.1.37; 1.1.1.38)
HSERO_RS14925 N.D.
HSERO_RS16685 +0.4
Citrate (Si)-synthase:
acetyl-CoA + oxaloacetate + H2O→citrate + coenzyme A + H+ (EC 2.3.3.1; 2.3.3.16; 2.3.3.3)
HSERO_RS06380 -0.0
HSERO_RS14890 N.D.

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information