MetaCyc Pathway: glycine betaine degradation I in Pseudomonas fluorescens FW300-N2E3

Add experiment(s):


Reactions and Genes L-Threonine (N)
remove
Betaine--homocysteine S-methyltransferase:
glycine betaine + L-homocysteine→N,N-dimethylglycine + L-methionine (EC 2.1.1.5)
No genes
Dimethylglycine oxidase:
N,N-dimethylglycine + dioxygen + a tetrahydrofolate→sarcosine + hydrogen peroxide + a 5,10-methylenetetrahydrofolate (EC 1.5.3.10)
No genes
sarcosine + dioxygen + a tetrahydrofolate→glycine + hydrogen peroxide + a 5,10-methylenetetrahydrofolate (EC 1.5.3.24)
AO353_07660 +0.1
Sarcosine oxidase:
sarcosine + dioxygen + H2O→glycine + formaldehyde + hydrogen peroxide (EC 1.5.3.1)
AO353_04635 -0.0
AO353_07645 -0.5
AO353_07650 +0.1
AO353_07655 +0.0
AO353_07660 +0.1
AO353_28240 +0.0
Glycine hydroxymethyltransferase (in reverse):
glycine + a 5,10-methylenetetrahydrofolate + H2O→L-serine + a tetrahydrofolate (EC 2.1.2.1)
AO353_07665 +2.4
AO353_10495 +0.0
AO353_10530 +0.1
AO353_14020 N.D.
AO353_14025 +0.0
AO353_29335 +0.0
L-serine ammonia-lyase:
L-serine→2-aminoprop-2-enoate + H2O (EC 4.3.1.17)
AO353_03505 -0.7
AO353_07775 +0.1
AO353_15500 +0.1
Tryptophanase:
2-aminoprop-2-enoate→2-iminopropanoate (spontaneous) (EC 4.1.99.1; 4.1.99.2; 4.3.1.13; 4.3.1.17; 4.3.1.18; 4.3.3.8; 4.4.1.1; 4.4.1.13; 4.4.1.15; 4.4.1.25; 4.4.1.28; 4.4.1.35; 4.5.1.2)
AO353_03505 -0.7
AO353_07775 +0.1
AO353_11680 -0.1
AO353_15500 +0.1
AO353_21740 -0.2
AO353_23295 +0.2
AO353_25210 +0.2
2-iminopropanoate + H2O→pyruvate + ammonium (spontaneous) (EC 3.5.99.10; 4.1.99.1; 4.1.99.2; 4.3.1.13; 4.3.1.17; 4.3.1.18; 4.3.3.8; 4.4.1.1; 4.4.1.13; 4.4.1.15; 4.4.1.25; 4.4.1.28; 4.4.1.35; 4.5.1.2)
AO353_03505 -0.7
AO353_07775 +0.1
AO353_09285 -0.8
AO353_11680 -0.1
AO353_15500 +0.1
AO353_21740 -0.2
AO353_23295 +0.2
AO353_24440 +0.3
AO353_25210 +0.2

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information