MetaCyc Pathway: alkane oxidation in Herbaspirillum seropedicae SmR1

Reactions and Genes	Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM
a long-chain alkane + dioxygen + a reduced [NADPH-hemoprotein reductase]→a long-chain fatty alcohol + an oxidized [NADPH-hemoprotein reductase] + H2O
No genes
Long-chain-alcohol oxidase: a long-chain fatty alcohol + dioxygen→a long-chain fatty aldehyde + hydrogen peroxide (EC 1.1.3.20)
No genes
Aldehyde dehydrogenase (NAD(+)): a fatty aldehyde + NAD+ + H2O→a fatty acid + NADH + 2 H+ (EC 1.2.1.3)
HSERO_RS04810	-0.2
HSERO_RS05115	-3.5
HSERO_RS05710	+0.1
HSERO_RS09465	-0.5
HSERO_RS11260	-0.1
HSERO_RS17620	+0.3
HSERO_RS19755	+0.0
HSERO_RS20590	+0.2
HSERO_RS20635	-0.1
HSERO_RS23860	-0.0
a fatty acid + NADPH + dioxygen + H+→an ω-hydroxy fatty acid + NADP+ + H2O
No genes
an ω-hydroxy fatty acid + dioxygen→an ω-oxo fatty acid + hydrogen peroxide
No genes
an ω-oxo fatty acid + NAD+ + H2O→an α,ω-dicarboxylate + NADH + 2 H+
No genes

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information