MetaCyc Pathway: octane oxidation in Herbaspirillum seropedicae SmR1

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Reactions and Genes Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM
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Rubredoxin--NAD(+) reductase (in reverse):
NADH + 2 an oxidized rubredoxin→2 a reduced rubredoxin + NAD+ + H+ (EC 1.18.1.1)
No genes
Alkane 1-monooxygenase:
2 a reduced rubredoxin + octane + dioxygen + 2 H+→octan-1-ol + 2 an oxidized rubredoxin + H2O (EC 1.14.15.3)
HSERO_RS19180 N.D.
octan-1-ol + an oxidized electron carrier→1-octanal + a reduced two electron carrier
No genes
Aldehyde dehydrogenase (NAD(+)):
1-octanal + NAD+ + H2O→NADH + octanoate + 2 H+ (EC 1.2.1.3)
HSERO_RS04810 +0.1
HSERO_RS05115 -3.4
HSERO_RS05710 +0.2
HSERO_RS09465 -0.8
HSERO_RS11260 +0.1
HSERO_RS17620 +0.1
HSERO_RS19755 +0.0
HSERO_RS20590 -0.1
HSERO_RS20635 -0.1
HSERO_RS23860 -0.0
Butyrate--CoA ligase:
octanoate + ATP + coenzyme A→octanoyl-CoA + AMP + diphosphate (EC 6.2.1.2; 6.2.1.3)
HSERO_RS12835 +0.0
HSERO_RS19285 +0.1

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information