MetaCyc Pathway: indole-3-acetate biosynthesis VI (bacteria) in Bifidobacterium breve UCC2003

Add experiment(s):


Reactions and Genes Recovery broth with Metronidazole 0.03 mM
remove
Aspartate transaminase:
L-tryptophan + 2-oxoglutarate→(indol-3-yl)pyruvate + L-glutamate (EC 2.6.1.1; 2.6.1.27)
BBR_RS13205 +0.0
BBR_RS13460 +0.1
BBR_RS14535 +1.4
BBR_RS15505 -0.1
BBR_RS15560 +0.2
BBR_RS17345 -0.0
BBR_RS17965 -0.1
BBR_RS19435 +1.0
Indolepyruvate decarboxylase:
(indol-3-yl)pyruvate + H+→(indol-3-yl)acetaldehyde + CO2 (EC 4.1.1.74)
No genes
Indole-3-acetaldehyde oxidase:
(indol-3-yl)acetaldehyde + dioxygen + H2O→(indol-3-yl)acetate + hydrogen peroxide + H+ (EC 1.2.3.7)
No genes

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information