MetaCyc Pathway: glycogen degradation II in Bifidobacterium breve UCC2003

Add experiment(s):


Reactions and Genes Recovery broth with Bicyclomycin 0.07 mM
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Phosphorylase:
a glycogen + n phosphate→an α-limit dextrin + n α-D-glucopyranose 1-phosphate (EC 2.4.1.1)
BBR_RS10565 +8.8
BBR_RS20865 -0.5
Amylo-alpha-1,6-glucosidase:
an α-limit dextrin→a debranched α-limit dextrin (EC 3.2.1.33)
No genes
Glucan 1,4-alpha-glucosidase:
a debranched α-limit dextrin + n H2O→n D-glucopyranose (EC 3.2.1.3)
No genes
Phosphorylase:
a debranched α-limit dextrin + n phosphate→n α-D-glucopyranose 1-phosphate (EC 2.4.1.1)
BBR_RS10565 +8.8
BBR_RS20865 -0.5
Hexokinase:
D-glucopyranose + ATP→D-glucopyranose 6-phosphate + ADP + H+ (EC 2.7.1.1; 2.7.1.2)
BBR_RS11100 +0.1
BBR_RS18130 +8.0
BBR_RS18495 +0.3
Phosphoglucomutase:
α-D-glucopyranose 1-phosphate→D-glucopyranose 6-phosphate (EC 5.4.2.2)
BBR_RS13010 N.D.
BBR_RS14220 +0.3
BBR_RS18705 N.D.

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information