MetaCyc Pathway: L-phenylalanine biosynthesis I in Parabacteroides merdae CL09T00C40

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Reactions and Genes diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
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Chorismate mutase:
chorismate→prephenate (EC 5.4.99.5)
HMPREF1078_RS01125 -1.6
Prephenate dehydratase:
prephenate + H+→3-phenyl-2-oxopropanoate + CO2 + H2O (EC 4.2.1.51)
HMPREF1078_RS01135 -0.8
Aspartate transaminase (in reverse):
3-phenyl-2-oxopropanoate + L-glutamate→L-phenylalanine + 2-oxoglutarate (EC 2.6.1.1; 2.6.1.27; 2.6.1.57)
HMPREF1078_RS01130 -1.6
HMPREF1078_RS02445 +0.4
HMPREF1078_RS03550 -0.1
HMPREF1078_RS07595 +1.8
HMPREF1078_RS12080 -1.8
HMPREF1078_RS13530 -0.6
HMPREF1078_RS17495 -4.8

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information