MetaCyc Pathway: aerobic respiration I (cytochrome c) in Pseudomonas fluorescens FW300-N2E2

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Reactions and Genes Nalidixic 0.004 mg/ml
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NADH[in] + 5 H+[in] + a ubiquinone→a ubiquinol + NAD+[in] + 4 H+[out] (EC 7.1.1.2)
Pf6N2E2_1255 +0.1
Pf6N2E2_265 N.D.
Pf6N2E2_266 N.D.
Pf6N2E2_267 N.D.
Pf6N2E2_268 N.D.
Pf6N2E2_269 N.D.
Pf6N2E2_270 N.D.
Pf6N2E2_271 N.D.
Pf6N2E2_272 N.D.
Pf6N2E2_273 N.D.
Pf6N2E2_274 N.D.
Pf6N2E2_275 N.D.
Pf6N2E2_276 N.D.
Pf6N2E2_277 N.D.
Pf6N2E2_5132 +0.2
Pf6N2E2_926 +1.9
Succinate dehydrogenase (ubiquinone):
succinate[in] + a ubiquinone→a ubiquinol + fumarate[in] (EC 1.3.5.1)
Pf6N2E2_5853 N.D.
a ubiquinol + 2 an oxidized c-type cytochrome[out] + 2 H+[in]→2 a reduced c-type cytochrome[out] + 4 H+[out] + a ubiquinone (EC 7.1.1.8)
No genes
4 a reduced c-type cytochrome[out] + dioxygen[in] + 8 H+[in]→2 H2O[in] + 4 an oxidized c-type cytochrome[out] + 4 H+[out] (EC 7.1.1.9)
Pf6N2E2_1254 -0.1
Pf6N2E2_1858 -0.1
Pf6N2E2_1871 -0.1
Pf6N2E2_2305 -0.3
Pf6N2E2_2306 -0.2
Pf6N2E2_2307 N.D.
Pf6N2E2_2308 -0.4
Pf6N2E2_2310 -0.3
Pf6N2E2_2311 -0.2
Pf6N2E2_2312 -0.4
Pf6N2E2_2313 -1.1
Pf6N2E2_4098 +0.0
Pf6N2E2_4099 +0.0
Pf6N2E2_4101 -0.2

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information