MetaCyc Pathway: partial TCA cycle (obligate autotrophs) in Dyella japonica UNC79MFTsu3.2

Reactions and Genes	D-Cycloserine 0.032 mg/ml
Phosphoenolpyruvate carboxylase (in reverse): phosphoenolpyruvate + hydrogen carbonate→oxaloacetate + phosphate (EC 4.1.1.31)
ABZR86_RS11555	+0.1
Citrate (Si)-synthase: oxaloacetate + acetyl-CoA + H2O→citrate + coenzyme A + H+ (EC 2.3.3.1; 2.3.3.16; 2.3.3.3)
ABZR86_RS11825	-2.2
oxaloacetate[in] + an electron-transfer quinol→(S)-malate[in] + an electron-transfer quinone (EC 1.1.5.4)
No genes
Aconitate hydratase: citrate→cis-aconitate + H2O (EC 4.2.1.3)
ABZR86_RS02165	-1.6
ABZR86_RS02170	+0.3
ABZR86_RS08435	-0.7
Fumarate hydratase: (S)-malate→fumarate + H2O (EC 4.2.1.2)
ABZR86_RS05855	+1.5
ABZR86_RS19555	-0.4
Aconitate hydratase: cis-aconitate + H2O→D-threo-isocitrate (EC 4.2.1.3)
ABZR86_RS02165	-1.6
ABZR86_RS02170	+0.3
ABZR86_RS08435	-0.7
Succinate dehydrogenase (ubiquinone) (in reverse): fumarate[in] + an electron-transfer quinol→succinate[in] + an electron-transfer quinone (EC 1.3.5.1)
ABZR86_RS06335	N.D.
Isocitrate dehydrogenase (NADP(+)): D-threo-isocitrate + NADP+→2-oxoglutarate + CO2 + NADPH (EC 1.1.1.42)
ABZR86_RS16345	+0.2

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information