MetaCyc Pathway: nitrogen remobilization from senescing leaves in Dyella japonica UNC79MFTsu3.2

Reactions and Genes	Fusidic 0.4 mg/ml
Pyruvate, phosphate dikinase: pyruvate + ATP + phosphate→phosphoenolpyruvate + AMP + diphosphate + H+ (EC 2.7.9.1)
No genes
Phosphoenolpyruvate carboxylase (in reverse): phosphoenolpyruvate + hydrogen carbonate→oxaloacetate + phosphate (EC 4.1.1.31)
ABZR86_RS11555	-0.0
Citrate (Si)-synthase: oxaloacetate + acetyl-CoA + H2O→citrate + coenzyme A + H+ (EC 2.3.3.1; 2.3.3.16; 2.3.3.3)
ABZR86_RS11825	+0.9
Aconitate hydratase: citrate→cis-aconitate + H2O (EC 4.2.1.3)
ABZR86_RS02165	-0.2
ABZR86_RS02170	-1.6
ABZR86_RS08435	-2.1
Aconitate hydratase: cis-aconitate + H2O→D-threo-isocitrate (EC 4.2.1.3)
ABZR86_RS02165	-0.2
ABZR86_RS02170	-1.6
ABZR86_RS08435	-2.1
Isocitrate dehydrogenase (NADP(+)): D-threo-isocitrate + NADP+→2-oxoglutarate + CO2 + NADPH (EC 1.1.1.42)
ABZR86_RS16345	-0.3
Isocitrate--homoisocitrate dehydrogenase: D-threo-isocitrate + NAD+→2-oxoglutarate + CO2 + NADH (EC 1.1.1.286; 1.1.1.41)
ABZR86_RS00740	N.D.
Glutamate synthase (ferredoxin) (in reverse): 2-oxoglutarate + L-glutamine + 2 H+ + 2 a reduced ferredoxin [iron-sulfur] cluster→2 L-glutamate + 2 an oxidized ferredoxin [iron-sulfur] cluster (EC 1.4.7.1)
ABZR86_RS21265	-0.1

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information