MetaCyc Pathway: TCA cycle VIII (Chlamydia) in Pseudomonas fluorescens FW300-N1B4

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Reactions and Genes methylglyoxal 0.008 vol%
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2-oxoglutarate + coenzyme A + NAD+→succinyl-CoA + CO2 + NADH (EC 1.2.1.105)
No genes
Succinate--CoA ligase (ADP-forming) (in reverse):
succinyl-CoA + ADP + phosphate→succinate + ATP + coenzyme A (EC 6.2.1.5)
Pf1N1B4_3684 +0.7
Pf1N1B4_3685 +0.5
Succinate dehydrogenase (ubiquinone):
succinate[in] + an electron-transfer quinone→fumarate[in] + an electron-transfer quinol (EC 1.3.5.1)
Pf1N1B4_3678 N.D.
Pf1N1B4_3679 N.D.
Pf1N1B4_3680 N.D.
Fumarate hydratase (in reverse):
fumarate + H2O→(S)-malate (EC 4.2.1.2)
Pf1N1B4_1088 N.D.
Pf1N1B4_367 +1.2
Pf1N1B4_683 +1.0
Malate dehydrogenase:
(S)-malate + NAD+→oxaloacetate + NADH + H+ (EC 1.1.1.37; 1.1.1.38)
No genes
Aspartate transaminase (in reverse):
oxaloacetate + L-glutamate→2-oxoglutarate + L-aspartate (EC 2.6.1.1)
Pf1N1B4_160 -0.0
Pf1N1B4_2018 -0.0
Pf1N1B4_2139 +0.2
Pf1N1B4_261 +0.0
Pf1N1B4_3564 -0.6
Pf1N1B4_3771 +0.2
Pf1N1B4_386 +0.2
Pf1N1B4_4186 -0.2
Pf1N1B4_4425 -0.0
Pf1N1B4_4646 -0.1
Pf1N1B4_4672 N.D.
Pf1N1B4_4996 -0.2
Pf1N1B4_5070 -0.1
Pf1N1B4_510 -0.2
Pf1N1B4_5999 -0.4
Pf1N1B4_818 +0.1
Pf1N1B4_849 -0.2

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information