MetaCyc Pathway: putrescine biosynthesis II in Pseudomonas fluorescens FW300-N1B4

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Reactions and Genes Spectinomycin 0.05 mg/ml
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Arginine decarboxylase:
L-arginine + H+→agmatine + CO2 (EC 4.1.1.19)
Pf1N1B4_1136 -0.2
Pf1N1B4_1296 -1.9
Pf1N1B4_4600 -0.2
Agmatine deiminase:
agmatine + H2O→N-carbamoylputrescine + ammonium (EC 3.5.3.12)
Pf1N1B4_1661 -0.8
Pf1N1B4_4325 -0.1
Pf1N1B4_4328 +0.1
N-carbamoylputrescine amidase:
N-carbamoylputrescine + 2 H+ + H2O→putrescine + ammonium + CO2 (EC 3.5.1.53)
Pf1N1B4_1662 +0.0
Pf1N1B4_4326 -0.3
Pf1N1B4_4382 +0.3

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information