MetaCyc Pathway: superpathway of purine nucleotide salvage in Burkholderia phytofirmans PsJN

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Reactions and Genes Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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Adenosine kinase:
adenosine + ATP→AMP + ADP + H+ (EC 2.7.1.20)
BPHYT_RS17035 -1.3
Purine-nucleoside phosphorylase:
adenosine + phosphate→adenine + α-D-ribose-1-phosphate (EC 2.4.2.1)
No genes
Adenylosuccinate synthase:
IMP + L-aspartate + GTP→adenylosuccinate + GDP + 2 H+ + phosphate (EC 6.3.4.4)
BPHYT_RS12525 N.D.
IMP dehydrogenase:
IMP + NAD+ + H2O→XMP + NADH + H+ (EC 1.1.1.205)
BPHYT_RS10250 -0.0
BPHYT_RS12020 N.D.
BPHYT_RS13715 +0.0
BPHYT_RS24710 N.D.
BPHYT_RS27545 +0.9
BPHYT_RS31260 -0.4
Purine-nucleoside phosphorylase:
guanosine + phosphate→guanine + α-D-ribose-1-phosphate (EC 2.4.2.1; 2.4.2.15)
No genes
Adenine phosphoribosyltransferase (in reverse):
adenine + 5-phospho-α-D-ribose 1-diphosphate→AMP + diphosphate (EC 2.4.2.7)
BPHYT_RS02940 -0.4
Adenylosuccinate lyase:
adenylosuccinate→AMP + fumarate (EC 4.3.2.2)
BPHYT_RS16715 N.D.
BPHYT_RS24070 +0.4
GMP synthase (glutamine-hydrolyzing):
XMP + ATP + L-glutamine + H2O→GMP + AMP + L-glutamate + diphosphate + 2 H+ (EC 6.3.5.2)
BPHYT_RS12010 N.D.
BPHYT_RS19555 +2.2
Hypoxanthine phosphoribosyltransferase (in reverse):
guanine + 5-phospho-α-D-ribose 1-diphosphate→GMP + diphosphate (EC 2.4.2.8)
BPHYT_RS02940 -0.4
BPHYT_RS12520 +0.4
BPHYT_RS17085 -0.0
Adenylate kinase:
AMP + ATP→2 ADP (EC 2.7.4.3)
BPHYT_RS15885 N.D.
Guanylate kinase:
GMP + ATP→GDP + ADP (EC 2.7.4.8)
BPHYT_RS15315 N.D.
BPHYT_RS29445 N.D.
Ribonucleoside-diphosphate reductase (in reverse):
ADP + a reduced thioredoxin→dADP + an oxidized thioredoxin + H2O (EC 1.17.4.1)
BPHYT_RS17055 N.D.
BPHYT_RS17060 N.D.
BPHYT_RS24545 +0.2
Nucleoside-diphosphate kinase:
GDP + ATP→GTP + ADP (EC 2.7.4.6)
BPHYT_RS12595 N.D.
BPHYT_RS15885 N.D.
Nucleoside-diphosphate kinase:
dADP + ATP→ADP + dATP (EC 2.7.4.6)
BPHYT_RS12595 N.D.

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information