| Reactions and Genes | R2A with nitrate 250 mM |
|---|
| remove |
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxydodecanoyl-[acp]→a (2E)-dodec-2-enoyl-[acp] + H2O (EC 4.2.1.59) |
| LRK54_RS03305 | N.D. |
| LRK54_RS13910 | -1.2 |
Trans-2-decenoyl-[acyl-carrier-protein] isomerase:
a (2E)-dodec-2-enoyl-[acp]→a (3Z)-dodec-3-enoyl-[acp] (EC 5.3.3.14) |
| No genes |
Beta-ketoacyl-acyl-carrier-protein synthase II:
a (3Z)-dodec-3-enoyl-[acp] + a malonyl-[acp] + H+→a (5Z)-3-oxo-tetradec-5-enoyl-[acp] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41) |
| LRK54_RS01175 | N.D. |
| LRK54_RS03015 | -0.8 |
| LRK54_RS09780 | -1.2 |
| LRK54_RS13915 | -0.9 |
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a (5Z)-3-oxo-tetradec-5-enoyl-[acp][cytosol] + NADPH[cytosol] + H+[cytosol]→a (3R,5Z)-3-hydroxy-tetradec-5-enoyl-[acp][cytosol] + NADP+[cytosol] (EC 1.1.1.100) |
| LRK54_RS00850 | -0.1 |
| LRK54_RS01185 | N.D. |
| LRK54_RS02570 | -0.3 |
| LRK54_RS08150 | +0.0 |
| LRK54_RS09760 | -0.7 |
| LRK54_RS14225 | -0.1 |
| LRK54_RS15975 | +0.0 |
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R,5Z)-3-hydroxy-tetradec-5-enoyl-[acp][cytosol]→a (2E,5Z)-tetradeca-2,5-dienoyl-[acp][cytosol] + H2O[cytosol] (EC 4.2.1.59) |
| LRK54_RS03305 | N.D. |
| LRK54_RS13910 | -1.2 |
Enoyl-[acyl-carrier-protein] reductase (NADH) (in reverse):
a (2E,5Z)-tetradeca-2,5-dienoyl-[acp][cytosol] + NADH[cytosol] + H+[cytosol]→a (5Z)-tetradec-5-enoyl-[acp][cytosol] + NAD+[cytosol] (EC 1.3.1.9) |
| LRK54_RS02705 | +0.3 |
Beta-ketoacyl-acyl-carrier-protein synthase II:
a (5Z)-tetradec-5-enoyl-[acp] + a malonyl-[acp] + H+→a (7Z)-3-oxo-hexadec-7-enoyl-[acp] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41) |
| LRK54_RS01175 | N.D. |
| LRK54_RS03015 | -0.8 |
| LRK54_RS09780 | -1.2 |
| LRK54_RS13915 | -0.9 |
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a (7Z)-3-oxo-hexadec-7-enoyl-[acp][cytosol] + NADPH[cytosol] + H+[cytosol]→a (3R,7Z)-3-hydroxy-hexadec-7-enoyl-[acp][cytosol] + NADP+[cytosol] (EC 1.1.1.100) |
| LRK54_RS00850 | -0.1 |
| LRK54_RS01185 | N.D. |
| LRK54_RS02570 | -0.3 |
| LRK54_RS08150 | +0.0 |
| LRK54_RS09760 | -0.7 |
| LRK54_RS14225 | -0.1 |
| LRK54_RS15975 | +0.0 |
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R,7Z)-3-hydroxy-hexadec-7-enoyl-[acp][cytosol]→a (2E,7Z)-hexadeca-2,7-dienoyl-[acp][cytosol] + H2O[cytosol] (EC 4.2.1.59) |
| LRK54_RS03305 | N.D. |
| LRK54_RS13910 | -1.2 |
Enoyl-[acyl-carrier-protein] reductase (NADH) (in reverse):
a (2E,7Z)-hexadeca-2,7-dienoyl-[acp][cytosol] + NADH[cytosol] + H+[cytosol]→a (7Z)-hexadec-7-enoyl-[acp][cytosol] + NAD+[cytosol] (EC 1.3.1.9) |
| LRK54_RS02705 | +0.3 |
Beta-ketoacyl-acyl-carrier-protein synthase II:
a (7Z)-hexadec-7-enoyl-[acp] + a malonyl-[acp] + H+→a (9Z)-3-oxo-octadec-9-enoyl-[acp] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41) |
| LRK54_RS01175 | N.D. |
| LRK54_RS03015 | -0.8 |
| LRK54_RS09780 | -1.2 |
| LRK54_RS13915 | -0.9 |
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a (9Z)-3-oxo-octadec-9-enoyl-[acp][cytosol] + NADPH[cytosol] + H+[cytosol]→a (3R,9Z)-3-hydroxy-octadec-9-enoyl-[acp][cytosol] + NADP+[cytosol] (EC 1.1.1.100) |
| LRK54_RS00850 | -0.1 |
| LRK54_RS01185 | N.D. |
| LRK54_RS02570 | -0.3 |
| LRK54_RS08150 | +0.0 |
| LRK54_RS09760 | -0.7 |
| LRK54_RS14225 | -0.1 |
| LRK54_RS15975 | +0.0 |
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R,9Z)-3-hydroxy-octadec-9-enoyl-[acp][cytosol]→a (2E,9Z)-octadeca-2,9-dienoyl-[acp][cytosol] + H2O[cytosol] (EC 4.2.1.59) |
| LRK54_RS03305 | N.D. |
| LRK54_RS13910 | -1.2 |
Enoyl-[acyl-carrier-protein] reductase (NADH) (in reverse):
a (2E,9Z)-octadeca-2,9-dienoyl-[acp] + NADH + H+→an oleoyl-[acp] + NAD+ (EC 1.3.1.9) |
| LRK54_RS02705 | +0.3 |
Links:
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information