| Reactions and Genes | inner cut, LB soft agar motility assay |
|---|
| remove |
[Acyl-carrier-protein] S-acetyltransferase:
acetyl-CoA + a soluble [acyl-carrier protein]→an acetyl-[acp] + coenzyme A (EC 2.3.1.38) |
| No genes |
| acetyl-CoA + a [carboxyl-carrier protein dimer]-N6-carboxybiotinyl-L-lysine→malonyl-CoA + a [biotin carboxyl-carrier-protein dimer]-N6-biotinyl-L-lysine (EC 2.1.3.15) |
| BPHYT_RS12420 | N.D. |
| BPHYT_RS33860 | N.D. |
[Acyl-carrier-protein] S-malonyltransferase:
malonyl-CoA + a soluble [acyl-carrier protein]→a malonyl-[acp] + coenzyme A (EC 2.3.1.39) |
| BPHYT_RS14430 | N.D. |
| BPHYT_RS23905 | -0.4 |
Beta-ketoacyl-acyl-carrier-protein synthase III:
acetyl-CoA + a malonyl-[acp] + H+→an acetoacetyl-[acp] + CO2 + coenzyme A (EC 2.3.1.180) |
| BPHYT_RS00625 | -0.1 |
| BPHYT_RS00655 | +0.0 |
| BPHYT_RS14435 | N.D. |
| BPHYT_RS19110 | -1.3 |
| BPHYT_RS19120 | -2.6 |
| BPHYT_RS30955 | +0.2 |
Beta-ketoacyl-acyl-carrier-protein synthase II:
an acetyl-[acp] + a malonyl-[acp] + H+→an acetoacetyl-[acp] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41) |
| BPHYT_RS14415 | N.D. |
| BPHYT_RS15125 | -0.2 |
| BPHYT_RS15130 | -0.1 |
| BPHYT_RS15145 | -0.3 |
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a 3-oxoacyl-[acyl-carrier protein] + NADPH + H+→a (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ (EC 1.1.1.100) |
| BPHYT_RS01050 | +0.2 |
| BPHYT_RS04770 | -0.2 |
| BPHYT_RS05365 | +0.1 |
| BPHYT_RS05385 | -0.3 |
| BPHYT_RS06420 | N.D. |
| BPHYT_RS07065 | -0.2 |
| BPHYT_RS08285 | N.D. |
| BPHYT_RS08365 | -0.3 |
| BPHYT_RS08890 | +0.2 |
| BPHYT_RS10170 | +0.2 |
| BPHYT_RS10200 | N.D. |
| BPHYT_RS10595 | -0.5 |
| BPHYT_RS10630 | -0.1 |
| BPHYT_RS10735 | N.D. |
| BPHYT_RS11845 | N.D. |
| BPHYT_RS13055 | -0.4 |
| BPHYT_RS14425 | N.D. |
| BPHYT_RS15135 | +0.5 |
| BPHYT_RS15890 | +0.0 |
| BPHYT_RS16040 | N.D. |
| BPHYT_RS16940 | +0.3 |
| BPHYT_RS20510 | N.D. |
| BPHYT_RS20625 | +0.6 |
| BPHYT_RS20775 | +0.2 |
| BPHYT_RS21600 | -0.0 |
| BPHYT_RS22135 | -0.4 |
| BPHYT_RS25030 | +0.3 |
| BPHYT_RS25415 | N.D. |
| BPHYT_RS25655 | +0.1 |
| BPHYT_RS26470 | -0.8 |
| BPHYT_RS28250 | N.D. |
| BPHYT_RS30440 | +0.4 |
| BPHYT_RS30465 | +0.6 |
| BPHYT_RS30795 | +2.7 |
| BPHYT_RS31385 | -0.1 |
| BPHYT_RS31405 | N.D. |
| BPHYT_RS31610 | -0.1 |
| BPHYT_RS31900 | -0.2 |
| BPHYT_RS32940 | -0.1 |
| BPHYT_RS33140 | N.D. |
| BPHYT_RS33705 | +0.5 |
| BPHYT_RS34945 | N.D. |
| BPHYT_RS34965 | N.D. |
| BPHYT_RS35505 | +0.1 |
| BPHYT_RS35675 | -1.0 |
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxyacyl-[acyl-carrier protein]→a trans-2-enoyl-[acyl-carrier protein] + H2O (EC 4.2.1.59) |
| BPHYT_RS12085 | N.D. |
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxydecanoyl-[acp]→a (2E)-dec-2-enoyl-[acp] + H2O (EC 4.2.1.59) |
| BPHYT_RS12085 | N.D. |
Trans-2-decenoyl-[acyl-carrier-protein] isomerase:
a (2E)-dec-2-enoyl-[acp]→a (3Z)-dec-3-enoyl-[acp] (EC 5.3.3.14) |
| No genes |
Enoyl-[acyl-carrier-protein] reductase (NADH) (in reverse):
a trans-2-enoyl-[acyl-carrier protein] + NADH + H+→a 2,3,4-saturated fatty acyl-[acp] + NAD+ (EC 1.3.1.9) |
| BPHYT_RS01880 | +0.1 |
| BPHYT_RS12390 | +0.0 |
| BPHYT_RS20615 | +0.2 |
| BPHYT_RS30015 | N.D. |
| BPHYT_RS33380 | +0.0 |
Enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) (in reverse):
a trans-2-enoyl-[acyl-carrier protein] + NADPH + H+→a 2,3,4-saturated fatty acyl-[acp] + NADP+ (EC 1.3.1.10; 1.3.1.104; 1.3.1.39) |
| BPHYT_RS12390 | +0.0 |
| BPHYT_RS32935 | -0.2 |
Beta-ketoacyl-acyl-carrier-protein synthase II:
a 2,3,4-saturated fatty acyl-[acp] + a malonyl-[acp] + H+→a 3-oxoacyl-[acyl-carrier protein] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41) |
| BPHYT_RS14415 | N.D. |
| BPHYT_RS15125 | -0.2 |
| BPHYT_RS15130 | -0.1 |
| BPHYT_RS15145 | -0.3 |
Beta-ketoacyl-acyl-carrier-protein synthase II:
a (3Z)-dec-3-enoyl-[acp] + a malonyl-[acp] + H+→a (5Z)-3-oxododec-5-enoyl-[acp] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41) |
| BPHYT_RS14415 | N.D. |
| BPHYT_RS15125 | -0.2 |
| BPHYT_RS15130 | -0.1 |
| BPHYT_RS15145 | -0.3 |
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a (5Z)-3-oxododec-5-enoyl-[acp] + NADPH + H+→a (3R,5Z)-3-hydroxydodec-5-enoyl-[acp] + NADP+ (EC 1.1.1.100) |
| BPHYT_RS01050 | +0.2 |
| BPHYT_RS04770 | -0.2 |
| BPHYT_RS05365 | +0.1 |
| BPHYT_RS05385 | -0.3 |
| BPHYT_RS06420 | N.D. |
| BPHYT_RS07065 | -0.2 |
| BPHYT_RS08285 | N.D. |
| BPHYT_RS08365 | -0.3 |
| BPHYT_RS08890 | +0.2 |
| BPHYT_RS10170 | +0.2 |
| BPHYT_RS10200 | N.D. |
| BPHYT_RS10595 | -0.5 |
| BPHYT_RS10630 | -0.1 |
| BPHYT_RS10735 | N.D. |
| BPHYT_RS11845 | N.D. |
| BPHYT_RS13055 | -0.4 |
| BPHYT_RS14425 | N.D. |
| BPHYT_RS15135 | +0.5 |
| BPHYT_RS15890 | +0.0 |
| BPHYT_RS16040 | N.D. |
| BPHYT_RS16940 | +0.3 |
| BPHYT_RS20510 | N.D. |
| BPHYT_RS20625 | +0.6 |
| BPHYT_RS20775 | +0.2 |
| BPHYT_RS21600 | -0.0 |
| BPHYT_RS22135 | -0.4 |
| BPHYT_RS25030 | +0.3 |
| BPHYT_RS25415 | N.D. |
| BPHYT_RS25655 | +0.1 |
| BPHYT_RS26470 | -0.8 |
| BPHYT_RS28250 | N.D. |
| BPHYT_RS30440 | +0.4 |
| BPHYT_RS30465 | +0.6 |
| BPHYT_RS30795 | +2.7 |
| BPHYT_RS31385 | -0.1 |
| BPHYT_RS31405 | N.D. |
| BPHYT_RS31610 | -0.1 |
| BPHYT_RS31900 | -0.2 |
| BPHYT_RS33140 | N.D. |
| BPHYT_RS33705 | +0.5 |
| BPHYT_RS34945 | N.D. |
| BPHYT_RS34965 | N.D. |
| BPHYT_RS35505 | +0.1 |
| BPHYT_RS35675 | -1.0 |
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R,5Z)-3-hydroxydodec-5-enoyl-[acp]→a (2E,5Z)-dodeca-3,5-dienoyl-[acp] + H2O (EC 4.2.1.59) |
| BPHYT_RS12085 | N.D. |
Enoyl-[acyl-carrier-protein] reductase (NADH) (in reverse):
a (2E,5Z)-dodeca-3,5-dienoyl-[acp] + NADH + H+→a (5Z)-dodec-5-enoyl-[acp] + NAD+ (EC 1.3.1.9) |
| BPHYT_RS01880 | +0.1 |
| BPHYT_RS12390 | +0.0 |
| BPHYT_RS20615 | +0.2 |
| BPHYT_RS30015 | N.D. |
| BPHYT_RS33380 | +0.0 |
Links:
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information