MetaCyc Pathway: L-fucose degradation III in Burkholderia phytofirmans PsJN
| Reactions and Genes | L-Fucose (C) |
|---|---|
| remove | |
| α-L-fucopyranose→β-L-fucopyranose (spontaneous) (EC 5.1.3.29) | |
| No genes | |
| β-L-fucopyranose + NADP+→L-fucono-1,5-lactone + NADPH + H+ (EC 1.1.1.435) | |
| No genes | |
| L-fucono-1,5-lactone→L-fucono-1,4-lactone (spontaneous) | |
| No genes | |
| L-fucono-1,5-lactone + H2O→L-fuconate + H+ (EC 3.1.1.120) | |
| No genes | |
| L-fucono-1,4-lactone + H2O→L-fuconate + H+ (EC 3.1.1.120) | |
| No genes | |
| L-fuconate dehydratase: L-fuconate→2-dehydro-3-deoxy-L-fuconate + H2O (EC 4.2.1.68) | |
| BPHYT | +0.0 |
| BPHYT | -4.7 |
| BPHYT | -3.0 |
| 2-dehydro-3-deoxy-L-fuconate + NAD+→2,4-didehydro-3-deoxy-L-fuconate + NADH + H+ (EC 1.1.1.434) | |
| BPHYT | -5.1 |
| 2,4-didehydro-3-deoxy-L-fuconate + H2O→(S)-lactate + pyruvate + H+ (EC 3.7.1.26) | |
| BPHYT | +0.2 |
| BPHYT | -4.6 |
Links:
- Pathway details at MetaCyc
- Fitness data for 6 genes
- All MetaCyc pathways for Burkholderia phytofirmans PsJN
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information