MetaCyc Pathway: superpathway of plastoquinol biosynthesis in Herbaspirillum seropedicae SmR1

Add experiment(s):


Reactions and Genes m-Inositol (C)
remove
geranyl diphosphate + 7 3-methylbut-3-en-1-yl diphosphate→all-trans-nonaprenyl diphosphate + 7 diphosphate (EC 2.5.1.84)
No genes
Aspartate transaminase:
L-tyrosine + 2-oxoglutarate→3-(4-hydroxyphenyl)pyruvate + L-glutamate (EC 2.6.1.1; 2.6.1.27; 2.6.1.5; 2.6.1.57)
HSERO_RS05425 +0.3
HSERO_RS08395 -0.1
HSERO_RS08705 -0.1
HSERO_RS09025 +0.3
HSERO_RS10455 -3.0
HSERO_RS12210 -0.7
HSERO_RS14160 +0.2
HSERO_RS15115 -0.0
HSERO_RS15220 +0.2
HSERO_RS15835 -1.4
HSERO_RS17885 -0.2
HSERO_RS20335 +0.2
HSERO_RS22025 -0.5
HSERO_RS23235 -1.1
HSERO_RS23520 -0.3
4-hydroxyphenylpyruvate dioxygenase:
3-(4-hydroxyphenyl)pyruvate + dioxygen→homogentisate + CO2 (EC 1.13.11.27)
HSERO_RS08335 +0.0
HSERO_RS18790 -0.1
HSERO_RS18800 +0.2
all-trans-nonaprenyl diphosphate + homogentisate + H+→2-methyl-6-all-trans-nonaprenyl-1,4-benzoquinol + CO2 + diphosphate (EC 2.5.1.117)
No genes
2-methyl-6-all-trans-nonaprenyl-1,4-benzoquinol + S-adenosyl-L-methionine→plastoquinol-9 + S-adenosyl-L-homocysteine + H+ (EC 2.1.1.295)
No genes

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information