MetaCyc Pathway: Fe(II) oxidation in Burkholderia phytofirmans PsJN

Add experiment(s):


Reactions and Genes Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
remove
Fe2+[out] + an oxidized rusticyanin[in]→a reduced rusticyanin[in] + Fe3+[out] (EC 1.16.9.1)
No genes
a reduced rusticyanin[out] + an oxidized Cyc1 cytochrome[out]→a reduced Cyc1 cytochrome[out] + an oxidized rusticyanin[out]
No genes
a reduced rusticyanin[out] + an oxidized CycA1 cytochrome[out]→a reduced CycA1 cytochrome[out] + an oxidized rusticyanin[out]
No genes
4 a reduced c-type cytochrome[out] + dioxygen[in] + 8 H+[in]→2 H2O[in] + 4 an oxidized c-type cytochrome[out] + 4 H+[out] (EC 7.1.1.9)
BPHYT_RS02640 -1.5
BPHYT_RS02645 N.D.
BPHYT_RS02665 -2.0
BPHYT_RS10055 N.D.
BPHYT_RS10060 -0.0
BPHYT_RS10065 -1.3
BPHYT_RS10070 +1.5
a ubiquinol + 2 an oxidized CycA1 cytochrome[out] + 2 H+[in]→2 a reduced CycA1 cytochrome[out] + 4 H+[out] + a ubiquinone (EC 7.1.1.8)
No genes
a ubiquinol + NAD+[in] + 4 H+[out]→NADH[in] + 5 H+[in] + a ubiquinone (EC 7.1.1.2)
BPHYT_RS00490 +0.1
BPHYT_RS06625 N.D.
BPHYT_RS06630 N.D.
BPHYT_RS06640 N.D.
BPHYT_RS06645 N.D.
BPHYT_RS06650 N.D.
BPHYT_RS06655 N.D.
BPHYT_RS06660 N.D.
BPHYT_RS06665 N.D.
BPHYT_RS06670 N.D.
BPHYT_RS06675 N.D.
BPHYT_RS06680 N.D.
BPHYT_RS06685 -0.5
BPHYT_RS06690 N.D.
BPHYT_RS07465 -0.0
BPHYT_RS11975 -0.2
BPHYT_RS20580 +0.4
BPHYT_RS24910 +0.6
BPHYT_RS25590 +0.5
BPHYT_RS33120 +0.1
BPHYT_RS33605 +0.3

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information