| Reactions and Genes | Vanillic Acid (C) |
|---|
| remove |
Aspartate transaminase (in reverse):
oxaloacetate + L-glutamate→L-aspartate + 2-oxoglutarate (EC 2.6.1.1) |
| PFLU_RS08510 | +0.0 |
| PFLU_RS09125 | -0.4 |
| PFLU_RS10980 | -0.1 |
| PFLU_RS13455 | -0.1 |
| PFLU_RS15480 | -0.0 |
| PFLU_RS16880 | -0.0 |
| PFLU_RS17055 | +0.0 |
| PFLU_RS17810 | +0.1 |
| PFLU_RS19680 | -0.2 |
| PFLU_RS21080 | +0.2 |
| PFLU_RS21355 | -0.2 |
| PFLU_RS21880 | +0.0 |
| PFLU_RS22640 | +0.2 |
| PFLU_RS22895 | -1.5 |
| PFLU_RS24775 | +0.1 |
| PFLU_RS29405 | +0.3 |
| PFLU_RS29850 | -0.1 |
Aspartate kinase:
L-aspartate + ATP→L-aspartyl-4-phosphate + ADP (EC 2.7.2.4) |
| PFLU_RS23265 | +0.4 |
Aspartate-semialdehyde dehydrogenase (in reverse):
L-aspartyl-4-phosphate + NADPH + H+→L-aspartate 4-semialdehyde + NADP+ + phosphate (EC 1.2.1.11) |
| PFLU_RS06680 | -0.7 |
| PFLU_RS20555 | -0.1 |
| PFLU_RS20560 | N.D. |
| L-aspartate 4-semialdehyde + pyruvate→(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H+ + H2O (EC 4.3.3.7) |
| PFLU_RS06945 | +0.0 |
| PFLU_RS07275 | -0.2 |
| PFLU_RS09565 | +0.0 |
| PFLU_RS16615 | +0.0 |
Homoserine dehydrogenase (in reverse):
L-aspartate 4-semialdehyde + NAD(P)H + H+→L-homoserine + NAD(P)+ (EC 1.1.1.3) |
| PFLU_RS09890 | +0.1 |
| PFLU_RS24550 | N.D. |
Homoserine kinase:
L-homoserine + ATP→O-phospho-L-homoserine + ADP + H+ (EC 2.7.1.39) |
| PFLU_RS00385 | N.D. |
| PFLU_RS22735 | -2.3 |
Homoserine O-succinyltransferase:
L-homoserine + succinyl-CoA→O-succinyl-L-homoserine + coenzyme A (EC 2.3.1.46) |
| No genes |
| (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + NAD(P)H + H+→(S)-2,3,4,5-tetrahydrodipicolinate + NAD(P)+ + H2O (EC 1.17.1.8) |
| PFLU_RS25890 | N.D. |
Cystathionine gamma-synthase:
O-succinyl-L-homoserine + L-cysteine→L-cystathionine + H+ + succinate (EC 2.5.1.48) |
| PFLU_RS02250 | +0.2 |
| PFLU_RS16625 | +0.1 |
| PFLU_RS20510 | -3.5 |
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase:
(S)-2,3,4,5-tetrahydrodipicolinate + succinyl-CoA + H2O→N-succinyl-2-amino-6-ketopimelate + coenzyme A (EC 2.3.1.117) |
| PFLU_RS06245 | N.D. |
Threonine synthase:
O-phospho-L-homoserine + H2O→L-threonine + phosphate (EC 4.2.3.1) |
| PFLU_RS09885 | -0.8 |
| PFLU_RS24545 | N.D. |
Cysteine-S-conjugate beta-lyase:
L-cystathionine + H2O→L-homocysteine + ammonium + pyruvate (EC 4.4.1.13) |
| No genes |
Succinyldiaminopimelate transaminase (in reverse):
N-succinyl-2-amino-6-ketopimelate + L-glutamate→N-succinyl-L,L-2,6-diaminopimelate + 2-oxoglutarate (EC 2.6.1.17) |
| PFLU_RS06260 | -0.2 |
| PFLU_RS23315 | +1.5 |
| PFLU_RS27595 | +0.4 |
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase:
L-homocysteine + 5-methyltetrahydropteroyl tri-L-glutamate→L-methionine + tetrahydropteroyl tri-L-glutamate (EC 2.1.1.14) |
| PFLU_RS17405 | -0.0 |
Methionine synthase:
L-homocysteine + a 5-methyltetrahydrofolate→L-methionine + a tetrahydrofolate (EC 2.1.1.13) |
| PFLU_RS13000 | -0.7 |
Succinyl-diaminopimelate desuccinylase:
N-succinyl-L,L-2,6-diaminopimelate + H2O→L,L-diaminopimelate + succinate (EC 3.5.1.18) |
| PFLU_RS06220 | N.D. |
Diaminopimelate epimerase:
L,L-diaminopimelate→meso-diaminopimelate (EC 5.1.1.7) |
| PFLU_RS10355 | -0.2 |
| PFLU_RS13140 | -0.3 |
| PFLU_RS17335 | +0.1 |
| PFLU_RS23725 | -0.3 |
| PFLU_RS29270 | N.D. |
Diaminopimelate decarboxylase:
meso-diaminopimelate + H+→L-lysine + CO2 (EC 4.1.1.20) |
| PFLU_RS29265 | N.D. |
Links:
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information