MetaCyc Pathway: putrescine biosynthesis II in Pseudomonas fluorescens FW300-N2E2

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Reactions and Genes Ying_Others16 rep B; time point 2
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Arginine decarboxylase:
L-arginine + H+→agmatine + CO2 (EC 4.1.1.19)
Pf6N2E2_3334 -1.1
Pf6N2E2_3504 +0.0
Agmatine deiminase:
agmatine + H2O→N-carbamoylputrescine + ammonium (EC 3.5.3.12)
Pf6N2E2_3876 -0.3
N-carbamoylputrescine amidase:
N-carbamoylputrescine + 2 H+ + H2O→putrescine + ammonium + CO2 (EC 3.5.1.53)
Pf6N2E2_1545 -0.2

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information