MetaCyc Pathway: photorespiration I in Pseudomonas fluorescens FW300-N2E2

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Reactions and Genes Ying_Others16 rep B; time point 2
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D-ribulose-1,5-bisphosphate + dioxygen→2-phosphoglycolate + 3-phospho-D-glycerate + 2 H+
No genes
Phosphoglycolate phosphatase:
2-phosphoglycolate + H2O→glycolate + phosphate (EC 3.1.3.18)
Pf6N2E2_2526 -0.4
Pf6N2E2_4089 -0.4
Pf6N2E2_4821 +0.2
Pf6N2E2_5945 -0.1
Pf6N2E2_843 +0.0
(S)-2-hydroxy-acid oxidase:
glycolate + dioxygen→glyoxylate + hydrogen peroxide (EC 1.1.3.15)
Pf6N2E2_137 -0.1
Glycine transaminase (in reverse):
glyoxylate + L-glutamate→glycine + 2-oxoglutarate (EC 2.6.1.4)
No genes
Serine--glyoxylate transaminase:
glyoxylate + L-serine→glycine + 3-hydroxypyruvate (EC 2.6.1.45)
No genes
glycine + NAD+ + a tetrahydrofolate→a 5,10-methylenetetrahydrofolate + ammonium + CO2 + NADH (EC 1.4.1.27)
Pf6N2E2_4251 -0.3
Pf6N2E2_4485 -0.2
Pf6N2E2_5857 N.D.
Glycerate dehydrogenase (in reverse):
3-hydroxypyruvate + NADH + H+→D-glycerate + NAD+ (EC 1.1.1.29)
No genes
Glycerate kinase:
D-glycerate + ATP→3-phospho-D-glycerate + ADP + H+ (EC 2.7.1.31)
Pf6N2E2_460 +0.2
Pf6N2E2_5532 N.D.
Pf6N2E2_5836 -0.0
Glycine hydroxymethyltransferase (in reverse):
glycine + a 5,10-methylenetetrahydrofolate + H2O→L-serine + a tetrahydrofolate (EC 2.1.2.1)
Pf6N2E2_4717 -1.5
Pf6N2E2_5082 N.D.
Pf6N2E2_5083 +0.1
Pf6N2E2_5295 -0.5

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information