MetaCyc Pathway: superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle in Burkholderia phytofirmans PsJN

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Reactions and Genes Paraquat dichloride 0.064 mg/ml
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Diphosphate--fructose-6-phosphate 1-phosphotransferase:
β-D-fructofuranose 6-phosphate + diphosphate→β-D-fructofuranose 1,6-bisphosphate + H+ + phosphate (EC 2.7.1.90)
No genes
6-phosphofructokinase:
β-D-fructofuranose 6-phosphate + ATP→β-D-fructofuranose 1,6-bisphosphate + ADP + H+ (EC 2.7.1.11)
No genes
Fructose-bisphosphate aldolase:
β-D-fructofuranose 1,6-bisphosphate→glycerone phosphate + D-glyceraldehyde 3-phosphate (EC 4.1.2.13)
BPHYT_RS10545 N.D.
BPHYT_RS16260 N.D.
Triose-phosphate isomerase (in reverse):
glycerone phosphate→D-glyceraldehyde 3-phosphate (EC 5.3.1.1)
BPHYT_RS06610 -1.0
Glyceraldehyde-3-phosphate dehydrogenase (NADP(+)):
D-glyceraldehyde 3-phosphate + NADP+ + H2O→3-phospho-D-glycerate + NADPH + 2 H+ (EC 1.2.1.9)
No genes
Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating):
D-glyceraldehyde 3-phosphate + NAD+ + phosphate→3-phospho-D-glyceroyl phosphate + NADH + H+ (EC 1.2.1.12)
BPHYT_RS16835 +0.0
Phosphoglycerate kinase (in reverse):
3-phospho-D-glyceroyl phosphate + ADP→3-phospho-D-glycerate + ATP (EC 2.7.2.3)
BPHYT_RS16270 -0.2
3-phospho-D-glycerate→2-phospho-D-glycerate (EC 5.4.2.12)
BPHYT_RS02590 -0.5
Phosphopyruvate hydratase:
2-phospho-D-glycerate→phosphoenolpyruvate + H2O (EC 4.2.1.11)
BPHYT_RS12675 N.D.
Pyruvate kinase (in reverse):
phosphoenolpyruvate + ADP + H+→pyruvate + ATP (EC 2.7.1.40)
BPHYT_RS16265 -0.2
pyruvate + a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine + H+→a [pyruvate dehydrogenase E2 protein] N6-S-acetyldihydrolipoyl-L-lysine + CO2 (EC 1.2.1.104; 1.2.4.1)
BPHYT_RS12840 -0.5
BPHYT_RS19775 -0.0
BPHYT_RS29355 +0.1
BPHYT_RS29360 +0.2
a [pyruvate dehydrogenase E2 protein] N6-S-acetyldihydrolipoyl-L-lysine + coenzyme A→acetyl-CoA + a [pyruvate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine (EC 1.2.1.104; 2.3.1.12)
BPHYT_RS12835 N.D.
BPHYT_RS29350 N.D.
Citrate (Si)-synthase:
oxaloacetate + acetyl-CoA + H2O→citrate + coenzyme A + H+ (EC 2.3.3.1; 2.3.3.16; 2.3.3.3)
BPHYT_RS15810 +0.1
BPHYT_RS19980 -0.3
BPHYT_RS20940 +0.8
BPHYT_RS27440 -0.4
BPHYT_RS33920 +0.8
a [pyruvate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine + NAD+→a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine + NADH + H+ (EC 1.2.1.104; 1.8.1.4)
BPHYT_RS08120 N.D.
BPHYT_RS12830 -0.8
Aconitate hydratase:
citrate→cis-aconitate + H2O (EC 4.2.1.3)
BPHYT_RS10160 -0.2
BPHYT_RS30145 -0.2
BPHYT_RS33980 -1.8
Aconitate hydratase:
cis-aconitate + H2O→D-threo-isocitrate (EC 4.2.1.3)
BPHYT_RS10160 -0.2
BPHYT_RS30145 -0.2
BPHYT_RS33980 -1.8
Isocitrate--homoisocitrate dehydrogenase:
D-threo-isocitrate + NAD+→2-oxoglutarate + CO2 + NADH (EC 1.1.1.286; 1.1.1.41)
No genes
2-oxoglutarate + coenzyme A + NAD+→succinyl-CoA + CO2 + NADH (EC 1.2.1.105)
No genes
Succinate--CoA ligase (ADP-forming) (in reverse):
succinyl-CoA + ADP + phosphate→succinate + ATP + coenzyme A (EC 6.2.1.5)
BPHYT_RS16340 -0.8
BPHYT_RS16345 -0.3
Succinate dehydrogenase (ubiquinone):
succinate[in] + an electron-transfer quinone→fumarate[in] + an electron-transfer quinol (EC 1.3.5.1)
BPHYT_RS33935 N.D.
Fumarate hydratase (in reverse):
fumarate + H2O→(S)-malate (EC 4.2.1.2)
BPHYT_RS06985 +1.7
BPHYT_RS14615 -0.0
Malate dehydrogenase:
(S)-malate + NAD+→oxaloacetate + NADH + H+ (EC 1.1.1.37; 1.1.1.38)
BPHYT_RS27110 +0.1
BPHYT_RS28460 -0.3
BPHYT_RS33955 N.D.

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information