MetaCyc Pathway: photorespiration I in Pseudomonas fluorescens FW300-N1B4

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Reactions and Genes L-Lactate (C)
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D-ribulose-1,5-bisphosphate + dioxygen→2-phosphoglycolate + 3-phospho-D-glycerate + 2 H+
No genes
Phosphoglycolate phosphatase:
2-phosphoglycolate + H2O→glycolate + phosphate (EC 3.1.3.18)
Pf1N1B4_1842 -0.0
Pf1N1B4_2544 -0.3
Pf1N1B4_357 N.D.
Pf1N1B4_4360 N.D.
Pf1N1B4_458 -0.4
(S)-2-hydroxy-acid oxidase:
glycolate + dioxygen→glyoxylate + hydrogen peroxide (EC 1.1.3.15)
Pf1N1B4_1187 -2.1
Pf1N1B4_4228 N.D.
Pf1N1B4_4229 -0.1
Pf1N1B4_5862 -0.1
Glycine transaminase (in reverse):
glyoxylate + L-glutamate→glycine + 2-oxoglutarate (EC 2.6.1.4)
No genes
Serine--glyoxylate transaminase:
glyoxylate + L-serine→glycine + 3-hydroxypyruvate (EC 2.6.1.45)
No genes
glycine + NAD+ + a tetrahydrofolate→a 5,10-methylenetetrahydrofolate + ammonium + CO2 + NADH (EC 1.4.1.27)
Pf1N1B4_1976 -0.2
Glycerate dehydrogenase (in reverse):
3-hydroxypyruvate + NADH + H+→D-glycerate + NAD+ (EC 1.1.1.29)
Pf1N1B4_2954 +0.2
Glycerate kinase:
D-glycerate + ATP→3-phospho-D-glycerate + ADP + H+ (EC 2.7.1.31)
Pf1N1B4_3425 +0.0
Pf1N1B4_3658 +0.3
Pf1N1B4_4998 N.D.
Pf1N1B4_642 +0.3
Glycine hydroxymethyltransferase (in reverse):
glycine + a 5,10-methylenetetrahydrofolate + H2O→L-serine + a tetrahydrofolate (EC 2.1.2.1)
Pf1N1B4_2161 +0.0
Pf1N1B4_2454 +0.1
Pf1N1B4_2778 N.D.
Pf1N1B4_2779 +0.1

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information