MetaCyc Pathway: L-arabinose degradation III in Pseudomonas fluorescens FW300-N1B4

Add experiment(s):


Reactions and Genes D-Galactose (C)
remove
L-arabinofuranose→L-arabinopyranose (spontaneous)
No genes
α-L-arabinopyranose + NAD(P)+→L-arabinono-1,4-lactone + NAD(P)H + H+ (EC 1.1.1.376)
No genes
L-arabinonolactonase:
L-arabinono-1,4-lactone + H2O→L-arabinonate + H+ (EC 3.1.1.15)
Pf1N1B4_413 -3.0
L-arabinonate dehydratase:
L-arabinonate→2-dehydro-3-deoxy-L-pentonate + H2O (EC 4.2.1.25)
Pf1N1B4_4621 -0.1
2-dehydro-3-deoxy-L-arabinonate dehydratase:
2-dehydro-3-deoxy-L-pentonate→2,5-dioxopentanoate + H2O (EC 4.2.1.43)
Pf1N1B4_3384 +0.1
Pf1N1B4_4623 -0.0
2,5-dioxovalerate dehydrogenase:
2,5-dioxopentanoate + NAD(P)+ + H2O→2-oxoglutarate + NAD(P)H + 2 H+ (EC 1.2.1.26)
Pf1N1B4_1109 -0.1
Pf1N1B4_3385 -0.0
Pf1N1B4_4624 -0.2
Pf1N1B4_5978 -0.3

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information