MetaCyc Pathway: superpathway of plastoquinol biosynthesis in Burkholderia phytofirmans PsJN

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Reactions and Genes L-Phenylalanine (C)
remove
geranyl diphosphate + 7 3-methylbut-3-en-1-yl diphosphate→all-trans-nonaprenyl diphosphate + 7 diphosphate (EC 2.5.1.84)
No genes
Aspartate transaminase:
L-tyrosine + 2-oxoglutarate→3-(4-hydroxyphenyl)pyruvate + L-glutamate (EC 2.6.1.1; 2.6.1.27; 2.6.1.5; 2.6.1.57)
BPHYT_RS00155 +0.1
BPHYT_RS02830 -0.0
BPHYT_RS04100 N.D.
BPHYT_RS05430 -0.0
BPHYT_RS05975 -0.2
BPHYT_RS06770 -0.2
BPHYT_RS06900 -5.8
BPHYT_RS08040 +0.0
BPHYT_RS08950 -1.7
BPHYT_RS09580 -0.2
BPHYT_RS10265 -0.0
BPHYT_RS10440 -0.2
BPHYT_RS13065 +0.1
BPHYT_RS13450 -0.4
BPHYT_RS14905 -1.2
BPHYT_RS15405 +0.0
BPHYT_RS15820 +0.2
BPHYT_RS17705 -0.2
BPHYT_RS21060 -0.2
BPHYT_RS21560 +0.1
BPHYT_RS21610 -0.0
BPHYT_RS21730 +0.2
BPHYT_RS22065 -0.1
BPHYT_RS22425 -0.1
BPHYT_RS26535 -0.1
BPHYT_RS26755 -0.0
BPHYT_RS27000 -0.0
BPHYT_RS28370 +0.0
BPHYT_RS28685 +0.3
BPHYT_RS28695 +0.1
BPHYT_RS30590 -0.3
BPHYT_RS30680 +0.1
BPHYT_RS32285 -0.2
BPHYT_RS32640 -0.0
BPHYT_RS35285 -0.2
4-hydroxyphenylpyruvate dioxygenase:
3-(4-hydroxyphenyl)pyruvate + dioxygen→homogentisate + CO2 (EC 1.13.11.27)
BPHYT_RS18295 +0.2
BPHYT_RS22675 +0.2
BPHYT_RS33445 -0.1
all-trans-nonaprenyl diphosphate + homogentisate + H+→2-methyl-6-all-trans-nonaprenyl-1,4-benzoquinol + CO2 + diphosphate (EC 2.5.1.117)
No genes
2-methyl-6-all-trans-nonaprenyl-1,4-benzoquinol + S-adenosyl-L-methionine→plastoquinol-9 + S-adenosyl-L-homocysteine + H+ (EC 2.1.1.295)
No genes

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information