MetaCyc Pathway: C4 photosynthetic carbon assimilation cycle, PEPCK type in Burkholderia phytofirmans PsJN

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Reactions and Genes L-Glutamine (C)
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Carbonate dehydratase (in reverse):
CO2 + H2O→hydrogen carbonate + H+ (EC 4.2.1.1)
BPHYT_RS02235 +0.4
BPHYT_RS05345 N.D.
BPHYT_RS05395 +0.3
BPHYT_RS06580 -0.1
BPHYT_RS07445 N.D.
BPHYT_RS10640 N.D.
BPHYT_RS23470 N.D.
BPHYT_RS26595 -0.2
BPHYT_RS26600 N.D.
Phosphoenolpyruvate carboxylase (in reverse):
hydrogen carbonate + phosphoenolpyruvate→oxaloacetate + phosphate (EC 4.1.1.31)
BPHYT_RS05225 -1.1
Aspartate transaminase (in reverse):
oxaloacetate + L-glutamate→L-aspartate + 2-oxoglutarate (EC 2.6.1.1)
BPHYT_RS00155 -0.0
BPHYT_RS04100 N.D.
BPHYT_RS05430 -0.1
BPHYT_RS05975 -0.1
BPHYT_RS06770 -0.1
BPHYT_RS08040 +0.0
BPHYT_RS08950 -1.7
BPHYT_RS09580 +0.2
BPHYT_RS10265 -0.0
BPHYT_RS10440 +0.1
BPHYT_RS13065 +0.1
BPHYT_RS13450 +0.2
BPHYT_RS15405 +0.1
BPHYT_RS15820 +0.0
BPHYT_RS21060 -0.4
BPHYT_RS21560 -0.0
BPHYT_RS21610 -0.1
BPHYT_RS21730 -0.1
BPHYT_RS22065 +0.0
BPHYT_RS22425 +0.0
BPHYT_RS26535 -0.1
BPHYT_RS27000 -0.2
BPHYT_RS28370 -0.3
BPHYT_RS28685 +0.0
BPHYT_RS28695 +0.1
BPHYT_RS30590 -0.3
BPHYT_RS30680 -0.0
BPHYT_RS35285 -0.2
Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) (in reverse):
oxaloacetate + NADPH + H+→(S)-malate + NADP+ (EC 1.1.1.40; 1.1.1.82)
BPHYT_RS16880 -1.9
BPHYT_RS18310 -1.5
L-aspartate[in]→L-aspartate[out]
No genes
(S)-malate[in]→(S)-malate[out]
No genes
Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)):
(S)-malate + NADP+→CO2 + pyruvate + NADPH (EC 1.1.1.40)
BPHYT_RS16880 -1.9
BPHYT_RS18310 -1.5
Aspartate transaminase:
L-aspartate + 2-oxoglutarate→oxaloacetate + L-glutamate (EC 2.6.1.1)
BPHYT_RS00155 -0.0
BPHYT_RS04100 N.D.
BPHYT_RS05430 -0.1
BPHYT_RS05975 -0.1
BPHYT_RS06770 -0.1
BPHYT_RS08040 +0.0
BPHYT_RS08950 -1.7
BPHYT_RS09580 +0.2
BPHYT_RS10265 -0.0
BPHYT_RS10440 +0.1
BPHYT_RS13065 +0.1
BPHYT_RS13450 +0.2
BPHYT_RS15405 +0.1
BPHYT_RS15820 +0.0
BPHYT_RS21060 -0.4
BPHYT_RS21560 -0.0
BPHYT_RS21610 -0.1
BPHYT_RS21730 -0.1
BPHYT_RS22065 +0.0
BPHYT_RS22425 +0.0
BPHYT_RS26535 -0.1
BPHYT_RS27000 -0.2
BPHYT_RS28370 -0.3
BPHYT_RS28685 +0.0
BPHYT_RS28695 +0.1
BPHYT_RS30590 -0.3
BPHYT_RS30680 -0.0
BPHYT_RS35285 -0.2
Alanine transaminase (in reverse):
pyruvate + L-glutamate→L-alanine + 2-oxoglutarate (EC 2.6.1.2)
BPHYT_RS08950 -1.7
Phosphoenolpyruvate carboxykinase (ATP):
oxaloacetate + ATP→CO2 + phosphoenolpyruvate + ADP (EC 4.1.1.49)
No genes
L-alanine[in]→L-alanine[out]
No genes
phosphoenolpyruvate[in]→phosphoenolpyruvate[out]
No genes
Alanine transaminase (in reverse):
L-alanine + 2-oxoglutarate→pyruvate + L-glutamate (EC 2.6.1.2)
BPHYT_RS08950 -1.7
Pyruvate, phosphate dikinase:
pyruvate + ATP + phosphate→phosphoenolpyruvate + AMP + diphosphate + H+ (EC 2.7.9.1)
No genes

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information