MetaCyc Pathway: oleate β-oxidation in Burkholderia phytofirmans PsJN

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Reactions and Genes Tween 20 (C)
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Long-chain-fatty-acid--CoA ligase:
oleate + ATP + coenzyme A→oleoyl-CoA + AMP + diphosphate
(EC 6.2.1.3)
BPHYT_RS08270 +0.0
BPHYT_RS17295 -1.2
BPHYT_RS19375 -0.2
oleoyl-CoA + an oxidized electron-transfer flavoprotein + H+→(2E,9Z)-octadec-2,9-enoyl-CoA + a reduced electron-transfer flavoprotein (EC 1.3.8.8)
No genes
Enoyl-CoA hydratase (in reverse):
(2E,9Z)-octadec-2,9-enoyl-CoA + H2O→(S)-3-hydroxy-(9Z)-octadecenoyl-CoA
(EC 4.2.1.17)
BPHYT_RS02345 +0.5
BPHYT_RS03225 -1.4
BPHYT_RS03235 +0.2
BPHYT_RS03825 N.D.
BPHYT_RS06755 N.D.
BPHYT_RS06760 -0.5
BPHYT_RS08375 N.D.
BPHYT_RS08630 -0.3
BPHYT_RS09560 -0.3
BPHYT_RS10815 N.D.
BPHYT_RS11780 N.D.
BPHYT_RS13345 +0.2
BPHYT_RS13545 -0.0
BPHYT_RS14830 +0.3
BPHYT_RS17335 +0.1
BPHYT_RS17350 N.D.
BPHYT_RS20025 -0.1
BPHYT_RS25360 N.D.
BPHYT_RS25695 N.D.
BPHYT_RS27105 +0.3
BPHYT_RS27895 +0.3
BPHYT_RS28015 -0.3
BPHYT_RS28020 N.D.
BPHYT_RS28620 +0.2
BPHYT_RS35465 -0.3
3-hydroxyacyl-CoA dehydrogenase:
(S)-3-hydroxy-(9Z)-octadecenoyl-CoA + NAD+→3-oxo-(9Z)-octadecenoyl-CoA + NADH + H+
(EC 1.1.1.35)
BPHYT_RS03225 -1.4
BPHYT_RS06760 -0.5
BPHYT_RS09560 -0.3
BPHYT_RS13545 -0.0
BPHYT_RS34155 -0.5
Acetyl-CoA C-acyltransferase (in reverse):
3-oxo-(9Z)-octadecenoyl-CoA + coenzyme A→acetyl-CoA + (7Z)-hexadecenoyl-CoA
(EC 2.3.1.16)
BPHYT_RS02230 -0.1
BPHYT_RS03230 -0.8
BPHYT_RS08275 -0.2
BPHYT_RS09150 -0.6
BPHYT_RS09180 -0.0
BPHYT_RS09565 -1.0
BPHYT_RS17345 +0.1
BPHYT_RS21955 -0.4
BPHYT_RS29385 -0.1
(7Z)-hexadecenoyl-CoA + an oxidized electron-transfer flavoprotein + H+→(2E,7Z)-hexadec-2,7-dienoyl-CoA + a reduced electron-transfer flavoprotein (EC 1.3.8.8)
No genes
Enoyl-CoA hydratase (in reverse):
(2E,7Z)-hexadec-2,7-dienoyl-CoA + H2O→(S)-3-hydroxy-(7Z)-hexadecenoyl-CoA
(EC 4.2.1.17)
BPHYT_RS02345 +0.5
BPHYT_RS03225 -1.4
BPHYT_RS03235 +0.2
BPHYT_RS03825 N.D.
BPHYT_RS06755 N.D.
BPHYT_RS06760 -0.5
BPHYT_RS08375 N.D.
BPHYT_RS08630 -0.3
BPHYT_RS09560 -0.3
BPHYT_RS10815 N.D.
BPHYT_RS11780 N.D.
BPHYT_RS13345 +0.2
BPHYT_RS13545 -0.0
BPHYT_RS14830 +0.3
BPHYT_RS17335 +0.1
BPHYT_RS17350 N.D.
BPHYT_RS20025 -0.1
BPHYT_RS25360 N.D.
BPHYT_RS25695 N.D.
BPHYT_RS27105 +0.3
BPHYT_RS27895 +0.3
BPHYT_RS28015 -0.3
BPHYT_RS28020 N.D.
BPHYT_RS28620 +0.2
BPHYT_RS35465 -0.3
3-hydroxyacyl-CoA dehydrogenase:
(S)-3-hydroxy-(7Z)-hexadecenoyl-CoA + NAD+→3-oxo-(7Z)-hexadecenoyl-CoA + NADH + H+
(EC 1.1.1.35)
BPHYT_RS03225 -1.4
BPHYT_RS06760 -0.5
BPHYT_RS09560 -0.3
BPHYT_RS13545 -0.0
BPHYT_RS34155 -0.5
Acetyl-CoA C-acyltransferase (in reverse):
3-oxo-(7Z)-hexadecenoyl-CoA + coenzyme A→acetyl-CoA + (5Z)-tetradecenoyl-CoA
(EC 2.3.1.16)
BPHYT_RS02230 -0.1
BPHYT_RS03230 -0.8
BPHYT_RS08275 -0.2
BPHYT_RS09150 -0.6
BPHYT_RS09180 -0.0
BPHYT_RS09565 -1.0
BPHYT_RS17345 +0.1
BPHYT_RS21955 -0.4
BPHYT_RS29385 -0.1
(5Z)-tetradecenoyl-CoA + an oxidized electron-transfer flavoprotein + H+→(2E,5Z)-tetradec-2,5-enoyl-CoA + a reduced electron-transfer flavoprotein (EC 1.3.8.8)
No genes
Dodecenoyl-CoA isomerase:
(2E,5Z)-tetradec-2,5-enoyl-CoA→(3E,5Z)-tetradeca-3,5-dienoyl-CoA
(EC 5.3.3.8)
BPHYT_RS03225 -1.4
BPHYT_RS09560 -0.3
BPHYT_RS13545 -0.0
Enoyl-CoA hydratase (in reverse):
(2E,5Z)-tetradec-2,5-enoyl-CoA + H2O→(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA
(EC 4.2.1.17)
BPHYT_RS02345 +0.5
BPHYT_RS03225 -1.4
BPHYT_RS03235 +0.2
BPHYT_RS03825 N.D.
BPHYT_RS06755 N.D.
BPHYT_RS06760 -0.5
BPHYT_RS08375 N.D.
BPHYT_RS08630 -0.3
BPHYT_RS09560 -0.3
BPHYT_RS10815 N.D.
BPHYT_RS11780 N.D.
BPHYT_RS13345 +0.2
BPHYT_RS13545 -0.0
BPHYT_RS14830 +0.3
BPHYT_RS17335 +0.1
BPHYT_RS17350 N.D.
BPHYT_RS20025 -0.1
BPHYT_RS25360 N.D.
BPHYT_RS25695 N.D.
BPHYT_RS27105 +0.3
BPHYT_RS27895 +0.3
BPHYT_RS28015 -0.3
BPHYT_RS28020 N.D.
BPHYT_RS28620 +0.2
BPHYT_RS35465 -0.3
Long-chain-3-hydroxyacyl-CoA dehydrogenase:
(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA + NAD+→3-oxo-(5Z)-tetradecenoyl-CoA + NADH + H+
(EC 1.1.1.211; 1.1.1.35)
BPHYT_RS03225 -1.4
BPHYT_RS06760 -0.5
BPHYT_RS09560 -0.3
BPHYT_RS13545 -0.0
BPHYT_RS34155 -0.5
(3E,5Z)-tetradeca-3,5-dienoyl-CoA + H2O→(3E,5Z)-tetradeca-3,5-dienoate + coenzyme A + H+
No genes
Acetyl-CoA C-acyltransferase (in reverse):
3-oxo-(5Z)-tetradecenoyl-CoA + coenzyme A→acetyl-CoA + (3Z)-dodec-3-enoyl-CoA
(EC 2.3.1.16)
BPHYT_RS02230 -0.1
BPHYT_RS03230 -0.8
BPHYT_RS08275 -0.2
BPHYT_RS09150 -0.6
BPHYT_RS09180 -0.0
BPHYT_RS09565 -1.0
BPHYT_RS17345 +0.1
BPHYT_RS21955 -0.4
BPHYT_RS29385 -0.1
Dodecenoyl-CoA isomerase:
(3Z)-dodec-3-enoyl-CoA→(2E)-dodec-2-enoyl-CoA
(EC 5.3.3.8)
BPHYT_RS03225 -1.4
BPHYT_RS09560 -0.3
BPHYT_RS13545 -0.0
Long-chain-enoyl-CoA hydratase (in reverse):
(2E)-dodec-2-enoyl-CoA + H2O→(S)-3-hydroxydodecanoyl-CoA
(EC 4.2.1.74)
No genes
Long-chain-3-hydroxyacyl-CoA dehydrogenase:
(S)-3-hydroxydodecanoyl-CoA + NAD+→3-oxododecanoyl-CoA + NADH + H+
(EC 1.1.1.211; 1.1.1.35)
BPHYT_RS03225 -1.4
BPHYT_RS06760 -0.5
BPHYT_RS09560 -0.3
BPHYT_RS13545 -0.0
BPHYT_RS34155 -0.5
Acetyl-CoA C-acyltransferase (in reverse):
3-oxododecanoyl-CoA + coenzyme A→acetyl-CoA + decanoyl-CoA
(EC 2.3.1.16)
BPHYT_RS02230 -0.1
BPHYT_RS03230 -0.8
BPHYT_RS08275 -0.2
BPHYT_RS09150 -0.6
BPHYT_RS09180 -0.0
BPHYT_RS09565 -1.0
BPHYT_RS17345 +0.1
BPHYT_RS21955 -0.4
BPHYT_RS29385 -0.1
decanoyl-CoA + an oxidized electron-transfer flavoprotein + H+→(2E)-dec-2-enoyl-CoA + a reduced electron-transfer flavoprotein (EC 1.3.8.7)
BPHYT_RS03220 -2.7
BPHYT_RS07100 +0.1
BPHYT_RS18740 +0.0
BPHYT_RS35460 -0.3
Long-chain-enoyl-CoA hydratase (in reverse):
(2E)-dec-2-enoyl-CoA + H2O→(S)-3-hydroxydecanoyl-CoA
(EC 4.2.1.74)
BPHYT_RS02345 +0.5
BPHYT_RS03225 -1.4
BPHYT_RS03235 +0.2
BPHYT_RS03825 N.D.
BPHYT_RS08375 N.D.
BPHYT_RS08630 -0.3
BPHYT_RS09560 -0.3
BPHYT_RS10815 N.D.
BPHYT_RS11780 N.D.
BPHYT_RS13545 -0.0
BPHYT_RS14830 +0.3
BPHYT_RS25360 N.D.
BPHYT_RS25695 N.D.
BPHYT_RS27105 +0.3
BPHYT_RS27895 +0.3
BPHYT_RS28620 +0.2
BPHYT_RS35465 -0.3
3-hydroxyacyl-CoA dehydrogenase:
(S)-3-hydroxydecanoyl-CoA + NAD+→3-oxodecanoyl-CoA + NADH + H+
(EC 1.1.1.35)
BPHYT_RS03225 -1.4
BPHYT_RS06760 -0.5
BPHYT_RS09560 -0.3
BPHYT_RS13545 -0.0
BPHYT_RS28020 N.D.
BPHYT_RS34155 -0.5
Acetyl-CoA C-acyltransferase (in reverse):
3-oxodecanoyl-CoA + coenzyme A→acetyl-CoA + octanoyl-CoA
(EC 2.3.1.16)
BPHYT_RS02230 -0.1
BPHYT_RS03230 -0.8
BPHYT_RS08275 -0.2
BPHYT_RS09150 -0.6
BPHYT_RS09180 -0.0
BPHYT_RS09565 -1.0
BPHYT_RS17345 +0.1
BPHYT_RS21955 -0.4
BPHYT_RS29385 -0.1
octanoyl-CoA + an oxidized electron-transfer flavoprotein + H+→(2E)-oct-2-enoyl-CoA + a reduced electron-transfer flavoprotein (EC 1.3.8.7)
BPHYT_RS03220 -2.7
BPHYT_RS07100 +0.1
BPHYT_RS18740 +0.0
BPHYT_RS35460 -0.3
Long-chain-enoyl-CoA hydratase (in reverse):
(2E)-oct-2-enoyl-CoA + H2O→(3S)-3-hydroxyoctanoyl-CoA
(EC 4.2.1.74)
No genes
3-hydroxyacyl-CoA dehydrogenase:
(3S)-3-hydroxyoctanoyl-CoA + NAD+→3-oxooctanoyl-CoA + NADH + H+
(EC 1.1.1.35)
BPHYT_RS03225 -1.4
BPHYT_RS06760 -0.5
BPHYT_RS09560 -0.3
BPHYT_RS13545 -0.0
BPHYT_RS34155 -0.5
Acetyl-CoA C-acyltransferase (in reverse):
3-oxooctanoyl-CoA + coenzyme A→acetyl-CoA + hexanoyl-CoA
(EC 2.3.1.16)
BPHYT_RS02230 -0.1
BPHYT_RS03230 -0.8
BPHYT_RS08275 -0.2
BPHYT_RS09150 -0.6
BPHYT_RS09180 -0.0
BPHYT_RS09565 -1.0
BPHYT_RS17345 +0.1
BPHYT_RS21955 -0.4
BPHYT_RS29385 -0.1
hexanoyl-CoA + an oxidized electron-transfer flavoprotein + H+→(2E)-hex-2-enoyl-CoA + a reduced electron-transfer flavoprotein (EC 1.3.8.7)
BPHYT_RS03220 -2.7
BPHYT_RS07100 +0.1
BPHYT_RS18740 +0.0
BPHYT_RS35460 -0.3
Long-chain-enoyl-CoA hydratase (in reverse):
(2E)-hex-2-enoyl-CoA + H2O→(S)-3-hydroxyhexanoyl-CoA
(EC 4.2.1.74)
BPHYT_RS02345 +0.5
BPHYT_RS03225 -1.4
BPHYT_RS03235 +0.2
BPHYT_RS03825 N.D.
BPHYT_RS08375 N.D.
BPHYT_RS08630 -0.3
BPHYT_RS09560 -0.3
BPHYT_RS10815 N.D.
BPHYT_RS11780 N.D.
BPHYT_RS13545 -0.0
BPHYT_RS14830 +0.3
BPHYT_RS25360 N.D.
BPHYT_RS25695 N.D.
BPHYT_RS27105 +0.3
BPHYT_RS27895 +0.3
BPHYT_RS28620 +0.2
BPHYT_RS35465 -0.3
3-hydroxyacyl-CoA dehydrogenase:
(S)-3-hydroxyhexanoyl-CoA + NAD+→3-oxohexanoyl-CoA + NADH + H+
(EC 1.1.1.35)
BPHYT_RS03225 -1.4
BPHYT_RS06760 -0.5
BPHYT_RS09560 -0.3
BPHYT_RS13545 -0.0
BPHYT_RS28020 N.D.
BPHYT_RS34155 -0.5
Acetyl-CoA C-acyltransferase (in reverse):
3-oxohexanoyl-CoA + coenzyme A→acetyl-CoA + butanoyl-CoA
(EC 2.3.1.16; 2.3.1.9)
BPHYT_RS02230 -0.1
BPHYT_RS03230 -0.8
BPHYT_RS08275 -0.2
BPHYT_RS09150 -0.6
BPHYT_RS09180 -0.0
BPHYT_RS09565 -1.0
BPHYT_RS17345 +0.1
BPHYT_RS21955 -0.4
BPHYT_RS29385 -0.1
butanoyl-CoA + an oxidized electron-transfer flavoprotein + H+→crotonyl-CoA + a reduced electron-transfer flavoprotein (EC 1.3.8.1)
BPHYT_RS23260 -0.3
BPHYT_RS25025 -0.5
crotonyl-CoA + H2O→(S)-3-hydroxybutanoyl-CoA (EC 4.2.1.150)
BPHYT_RS02345 +0.5
BPHYT_RS03225 -1.4
BPHYT_RS03235 +0.2
BPHYT_RS03825 N.D.
BPHYT_RS08375 N.D.
BPHYT_RS08630 -0.3
BPHYT_RS09560 -0.3
BPHYT_RS10815 N.D.
BPHYT_RS11780 N.D.
BPHYT_RS13545 -0.0
BPHYT_RS14830 +0.3
BPHYT_RS25360 N.D.
BPHYT_RS25695 N.D.
BPHYT_RS27105 +0.3
BPHYT_RS27895 +0.3
BPHYT_RS28620 +0.2
BPHYT_RS35465 -0.3
3-hydroxyacyl-CoA dehydrogenase:
(S)-3-hydroxybutanoyl-CoA + NAD+→acetoacetyl-CoA + NADH + H+
(EC 1.1.1.35)
BPHYT_RS03225 -1.4
BPHYT_RS06760 -0.5
BPHYT_RS09560 -0.3
BPHYT_RS13545 -0.0
BPHYT_RS28020 N.D.
BPHYT_RS34155 -0.5
Acetyl-CoA C-acyltransferase (in reverse):
acetoacetyl-CoA + coenzyme A→2 acetyl-CoA
(EC 2.3.1.16; 2.3.1.9)
BPHYT_RS02230 -0.1
BPHYT_RS03230 -0.8
BPHYT_RS08275 -0.2
BPHYT_RS09150 -0.6
BPHYT_RS09180 -0.0
BPHYT_RS09565 -1.0
BPHYT_RS17345 +0.1
BPHYT_RS21955 -0.4
BPHYT_RS29385 -0.1

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information