MetaCyc Pathway: palmitate biosynthesis III in Burkholderia phytofirmans PsJN

Add experiment(s):


Reactions and Genes D-Galactose (C)
remove
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
an acetoacetyl-[acp] + NADPH + H+→a (3R)-3-hydroxybutanoyl-[acp] + NADP+ (EC 1.1.1.100)
BPHYT_RS01050 -0.1
BPHYT_RS04770 +0.0
BPHYT_RS05365 -0.2
BPHYT_RS05385 +0.3
BPHYT_RS06420 N.D.
BPHYT_RS07065 -0.0
BPHYT_RS08285 N.D.
BPHYT_RS08365 -0.0
BPHYT_RS08890 -0.2
BPHYT_RS10170 +0.1
BPHYT_RS10200 N.D.
BPHYT_RS10595 -0.1
BPHYT_RS10630 +0.1
BPHYT_RS10735 N.D.
BPHYT_RS11845 N.D.
BPHYT_RS13055 -0.5
BPHYT_RS14425 N.D.
BPHYT_RS15135 +0.1
BPHYT_RS15890 -1.4
BPHYT_RS16040 N.D.
BPHYT_RS16940 -2.2
BPHYT_RS20510 N.D.
BPHYT_RS20625 +0.1
BPHYT_RS20775 +0.5
BPHYT_RS21600 +0.1
BPHYT_RS22135 -0.2
BPHYT_RS25030 -0.1
BPHYT_RS25415 N.D.
BPHYT_RS25655 +0.1
BPHYT_RS26470 +0.6
BPHYT_RS28250 N.D.
BPHYT_RS30440 +0.0
BPHYT_RS30465 -1.2
BPHYT_RS30795 -0.2
BPHYT_RS31385 +0.3
BPHYT_RS31405 N.D.
BPHYT_RS31610 +0.0
BPHYT_RS31900 -0.2
BPHYT_RS33140 N.D.
BPHYT_RS33705 -0.1
BPHYT_RS34945 N.D.
BPHYT_RS34965 N.D.
BPHYT_RS35505 -0.2
BPHYT_RS35675 -0.2
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxybutanoyl-[acp]→a (2E)-but-2-enoyl-[acp] + H2O (EC 4.2.1.59)
BPHYT_RS12085 N.D.
Enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) (in reverse):
a (2E)-but-2-enoyl-[acp] + NADPH + H+→a butanoyl-[acp] + NADP+ (EC 1.3.1.10; 1.3.1.104; 1.3.1.39)
BPHYT_RS32935 -0.0
Beta-ketoacyl-acyl-carrier-protein synthase II:
a butanoyl-[acp] + a malonyl-[acp] + H+→a 3-oxohexanoyl-[acp] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41)
BPHYT_RS14415 N.D.
BPHYT_RS15125 +0.0
BPHYT_RS15130 +0.0
BPHYT_RS15145 +0.1
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a 3-oxohexanoyl-[acp] + NADPH + H+→a (3R)-3-hydroxyhexanoyl-[acp] + NADP+ (EC 1.1.1.100)
BPHYT_RS01050 -0.1
BPHYT_RS04770 +0.0
BPHYT_RS05365 -0.2
BPHYT_RS05385 +0.3
BPHYT_RS06420 N.D.
BPHYT_RS07065 -0.0
BPHYT_RS08285 N.D.
BPHYT_RS08365 -0.0
BPHYT_RS08890 -0.2
BPHYT_RS10170 +0.1
BPHYT_RS10200 N.D.
BPHYT_RS10595 -0.1
BPHYT_RS10630 +0.1
BPHYT_RS10735 N.D.
BPHYT_RS11845 N.D.
BPHYT_RS13055 -0.5
BPHYT_RS14425 N.D.
BPHYT_RS15135 +0.1
BPHYT_RS15890 -1.4
BPHYT_RS16040 N.D.
BPHYT_RS16940 -2.2
BPHYT_RS20510 N.D.
BPHYT_RS20625 +0.1
BPHYT_RS20775 +0.5
BPHYT_RS21600 +0.1
BPHYT_RS22135 -0.2
BPHYT_RS25030 -0.1
BPHYT_RS25415 N.D.
BPHYT_RS25655 +0.1
BPHYT_RS26470 +0.6
BPHYT_RS28250 N.D.
BPHYT_RS30440 +0.0
BPHYT_RS30465 -1.2
BPHYT_RS30795 -0.2
BPHYT_RS31385 +0.3
BPHYT_RS31405 N.D.
BPHYT_RS31610 +0.0
BPHYT_RS31900 -0.2
BPHYT_RS33140 N.D.
BPHYT_RS33705 -0.1
BPHYT_RS34945 N.D.
BPHYT_RS34965 N.D.
BPHYT_RS35505 -0.2
BPHYT_RS35675 -0.2
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxyhexanoyl-[acp]→a (2E)-hex-2-enoyl-[acp] + H2O (EC 4.2.1.59)
BPHYT_RS12085 N.D.
Enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) (in reverse):
a (2E)-hex-2-enoyl-[acp] + NADPH + H+→a hexanoyl-[acp] + NADP+ (EC 1.3.1.10; 1.3.1.104; 1.3.1.39)
BPHYT_RS32935 -0.0
Beta-ketoacyl-acyl-carrier-protein synthase II:
a hexanoyl-[acp] + a malonyl-[acp] + H+→a 3-oxooctanoyl-[acp] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41)
BPHYT_RS14415 N.D.
BPHYT_RS15125 +0.0
BPHYT_RS15130 +0.0
BPHYT_RS15145 +0.1
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a 3-oxooctanoyl-[acp] + NADPH + H+→a (3R)-3-hydroxyoctanoyl-[acp] + NADP+ (EC 1.1.1.100)
BPHYT_RS01050 -0.1
BPHYT_RS04770 +0.0
BPHYT_RS05365 -0.2
BPHYT_RS05385 +0.3
BPHYT_RS06420 N.D.
BPHYT_RS07065 -0.0
BPHYT_RS08285 N.D.
BPHYT_RS08365 -0.0
BPHYT_RS08890 -0.2
BPHYT_RS10170 +0.1
BPHYT_RS10200 N.D.
BPHYT_RS10595 -0.1
BPHYT_RS10630 +0.1
BPHYT_RS10735 N.D.
BPHYT_RS11845 N.D.
BPHYT_RS13055 -0.5
BPHYT_RS14425 N.D.
BPHYT_RS15135 +0.1
BPHYT_RS15890 -1.4
BPHYT_RS16040 N.D.
BPHYT_RS16940 -2.2
BPHYT_RS20510 N.D.
BPHYT_RS20625 +0.1
BPHYT_RS20775 +0.5
BPHYT_RS21600 +0.1
BPHYT_RS22135 -0.2
BPHYT_RS25030 -0.1
BPHYT_RS25415 N.D.
BPHYT_RS25655 +0.1
BPHYT_RS26470 +0.6
BPHYT_RS28250 N.D.
BPHYT_RS30440 +0.0
BPHYT_RS30465 -1.2
BPHYT_RS30795 -0.2
BPHYT_RS31385 +0.3
BPHYT_RS31405 N.D.
BPHYT_RS31610 +0.0
BPHYT_RS31900 -0.2
BPHYT_RS33140 N.D.
BPHYT_RS33705 -0.1
BPHYT_RS34945 N.D.
BPHYT_RS34965 N.D.
BPHYT_RS35505 -0.2
BPHYT_RS35675 -0.2
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxyoctanoyl-[acp]→a (2E)-oct-2-enoyl-[acp] + H2O (EC 4.2.1.59)
BPHYT_RS12085 N.D.
Enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) (in reverse):
a (2E)-oct-2-enoyl-[acp] + NADPH + H+→an octanoyl-[acp] + NADP+ (EC 1.3.1.10; 1.3.1.104; 1.3.1.39)
BPHYT_RS32935 -0.0
Beta-ketoacyl-acyl-carrier-protein synthase II:
an octanoyl-[acp] + a malonyl-[acp] + H+→a 3-oxodecanoyl-[acp] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41)
BPHYT_RS14415 N.D.
BPHYT_RS15125 +0.0
BPHYT_RS15130 +0.0
BPHYT_RS15145 +0.1
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a 3-oxodecanoyl-[acp] + NADPH + H+→a (3R)-3-hydroxydecanoyl-[acp] + NADP+ (EC 1.1.1.100)
BPHYT_RS01050 -0.1
BPHYT_RS04770 +0.0
BPHYT_RS05365 -0.2
BPHYT_RS05385 +0.3
BPHYT_RS06420 N.D.
BPHYT_RS07065 -0.0
BPHYT_RS08285 N.D.
BPHYT_RS08365 -0.0
BPHYT_RS08890 -0.2
BPHYT_RS10170 +0.1
BPHYT_RS10200 N.D.
BPHYT_RS10595 -0.1
BPHYT_RS10630 +0.1
BPHYT_RS10735 N.D.
BPHYT_RS11845 N.D.
BPHYT_RS13055 -0.5
BPHYT_RS14425 N.D.
BPHYT_RS15135 +0.1
BPHYT_RS15890 -1.4
BPHYT_RS16040 N.D.
BPHYT_RS16940 -2.2
BPHYT_RS20510 N.D.
BPHYT_RS20625 +0.1
BPHYT_RS20775 +0.5
BPHYT_RS21600 +0.1
BPHYT_RS22135 -0.2
BPHYT_RS25030 -0.1
BPHYT_RS25415 N.D.
BPHYT_RS25655 +0.1
BPHYT_RS26470 +0.6
BPHYT_RS28250 N.D.
BPHYT_RS30440 +0.0
BPHYT_RS30465 -1.2
BPHYT_RS30795 -0.2
BPHYT_RS31385 +0.3
BPHYT_RS31405 N.D.
BPHYT_RS31610 +0.0
BPHYT_RS31900 -0.2
BPHYT_RS33140 N.D.
BPHYT_RS33705 -0.1
BPHYT_RS34945 N.D.
BPHYT_RS34965 N.D.
BPHYT_RS35505 -0.2
BPHYT_RS35675 -0.2
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxydecanoyl-[acp]→a (2E)-dec-2-enoyl-[acp] + H2O (EC 4.2.1.59)
BPHYT_RS12085 N.D.
Enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) (in reverse):
a (2E)-dec-2-enoyl-[acp] + NADPH + H+→a decanoyl-[acp] + NADP+ (EC 1.3.1.10; 1.3.1.104; 1.3.1.39)
BPHYT_RS32935 -0.0
Beta-ketoacyl-acyl-carrier-protein synthase II:
a decanoyl-[acp] + a malonyl-[acp] + H+→a 3-oxododecanoyl-[acp] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41)
BPHYT_RS14415 N.D.
BPHYT_RS15125 +0.0
BPHYT_RS15130 +0.0
BPHYT_RS15145 +0.1
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a 3-oxododecanoyl-[acp] + NADPH + H+→a (3R)-3-hydroxydodecanoyl-[acp] + NADP+ (EC 1.1.1.100)
BPHYT_RS01050 -0.1
BPHYT_RS04770 +0.0
BPHYT_RS05365 -0.2
BPHYT_RS05385 +0.3
BPHYT_RS06420 N.D.
BPHYT_RS07065 -0.0
BPHYT_RS08285 N.D.
BPHYT_RS08365 -0.0
BPHYT_RS08890 -0.2
BPHYT_RS10170 +0.1
BPHYT_RS10200 N.D.
BPHYT_RS10595 -0.1
BPHYT_RS10630 +0.1
BPHYT_RS10735 N.D.
BPHYT_RS11845 N.D.
BPHYT_RS13055 -0.5
BPHYT_RS14425 N.D.
BPHYT_RS15135 +0.1
BPHYT_RS15890 -1.4
BPHYT_RS16040 N.D.
BPHYT_RS16940 -2.2
BPHYT_RS20510 N.D.
BPHYT_RS20625 +0.1
BPHYT_RS20775 +0.5
BPHYT_RS21600 +0.1
BPHYT_RS22135 -0.2
BPHYT_RS25030 -0.1
BPHYT_RS25415 N.D.
BPHYT_RS25655 +0.1
BPHYT_RS26470 +0.6
BPHYT_RS28250 N.D.
BPHYT_RS30440 +0.0
BPHYT_RS30465 -1.2
BPHYT_RS30795 -0.2
BPHYT_RS31385 +0.3
BPHYT_RS31405 N.D.
BPHYT_RS31610 +0.0
BPHYT_RS31900 -0.2
BPHYT_RS33140 N.D.
BPHYT_RS33705 -0.1
BPHYT_RS34945 N.D.
BPHYT_RS34965 N.D.
BPHYT_RS35505 -0.2
BPHYT_RS35675 -0.2
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxydodecanoyl-[acp]→a (2E)-dodec-2-enoyl-[acp] + H2O (EC 4.2.1.59)
BPHYT_RS12085 N.D.
Enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) (in reverse):
a (2E)-dodec-2-enoyl-[acp] + NADPH + H+→a dodecanoyl-[acp] + NADP+ (EC 1.3.1.10; 1.3.1.104; 1.3.1.39)
BPHYT_RS32935 -0.0
Beta-ketoacyl-acyl-carrier-protein synthase II:
a dodecanoyl-[acp] + a malonyl-[acp] + H+→a 3-oxotetradecanoyl-[acp] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41)
BPHYT_RS14415 N.D.
BPHYT_RS15125 +0.0
BPHYT_RS15130 +0.0
BPHYT_RS15145 +0.1
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a 3-oxotetradecanoyl-[acp] + NADPH + H+→a (3R)-3-hydroxytetradecanoyl-[acp] + NADP+ (EC 1.1.1.100)
BPHYT_RS01050 -0.1
BPHYT_RS04770 +0.0
BPHYT_RS05365 -0.2
BPHYT_RS05385 +0.3
BPHYT_RS06420 N.D.
BPHYT_RS07065 -0.0
BPHYT_RS08285 N.D.
BPHYT_RS08365 -0.0
BPHYT_RS08890 -0.2
BPHYT_RS10170 +0.1
BPHYT_RS10200 N.D.
BPHYT_RS10595 -0.1
BPHYT_RS10630 +0.1
BPHYT_RS10735 N.D.
BPHYT_RS11845 N.D.
BPHYT_RS13055 -0.5
BPHYT_RS14425 N.D.
BPHYT_RS15135 +0.1
BPHYT_RS15890 -1.4
BPHYT_RS16040 N.D.
BPHYT_RS16940 -2.2
BPHYT_RS20510 N.D.
BPHYT_RS20625 +0.1
BPHYT_RS20775 +0.5
BPHYT_RS21600 +0.1
BPHYT_RS22135 -0.2
BPHYT_RS25030 -0.1
BPHYT_RS25415 N.D.
BPHYT_RS25655 +0.1
BPHYT_RS26470 +0.6
BPHYT_RS28250 N.D.
BPHYT_RS30440 +0.0
BPHYT_RS30465 -1.2
BPHYT_RS30795 -0.2
BPHYT_RS31385 +0.3
BPHYT_RS31405 N.D.
BPHYT_RS31610 +0.0
BPHYT_RS31900 -0.2
BPHYT_RS33140 N.D.
BPHYT_RS33705 -0.1
BPHYT_RS34945 N.D.
BPHYT_RS34965 N.D.
BPHYT_RS35505 -0.2
BPHYT_RS35675 -0.2
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxytetradecanoyl-[acp]→a (2E)-tetradec-2-enoyl-[acp] + H2O (EC 4.2.1.59)
BPHYT_RS12085 N.D.
Enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) (in reverse):
a (2E)-tetradec-2-enoyl-[acp] + NADPH + H+→a myristoyl-[acp] + NADP+ (EC 1.3.1.10; 1.3.1.104; 1.3.1.39)
BPHYT_RS32935 -0.0
Beta-ketoacyl-acyl-carrier-protein synthase II:
a myristoyl-[acp] + a malonyl-[acp] + H+→a 3-oxohexadecanoyl-[acp] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41)
BPHYT_RS14415 N.D.
BPHYT_RS15125 +0.0
BPHYT_RS15130 +0.0
BPHYT_RS15145 +0.1
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a 3-oxohexadecanoyl-[acp] + NADPH + H+→a (3R)-3-hydroxyhexadecanoyl-[acp] + NADP+ (EC 1.1.1.100)
BPHYT_RS01050 -0.1
BPHYT_RS04770 +0.0
BPHYT_RS05365 -0.2
BPHYT_RS05385 +0.3
BPHYT_RS06420 N.D.
BPHYT_RS07065 -0.0
BPHYT_RS08285 N.D.
BPHYT_RS08365 -0.0
BPHYT_RS08890 -0.2
BPHYT_RS10170 +0.1
BPHYT_RS10200 N.D.
BPHYT_RS10595 -0.1
BPHYT_RS10630 +0.1
BPHYT_RS10735 N.D.
BPHYT_RS11845 N.D.
BPHYT_RS13055 -0.5
BPHYT_RS14425 N.D.
BPHYT_RS15135 +0.1
BPHYT_RS15890 -1.4
BPHYT_RS16040 N.D.
BPHYT_RS16940 -2.2
BPHYT_RS20510 N.D.
BPHYT_RS20625 +0.1
BPHYT_RS20775 +0.5
BPHYT_RS21600 +0.1
BPHYT_RS22135 -0.2
BPHYT_RS25030 -0.1
BPHYT_RS25415 N.D.
BPHYT_RS25655 +0.1
BPHYT_RS26470 +0.6
BPHYT_RS28250 N.D.
BPHYT_RS30440 +0.0
BPHYT_RS30465 -1.2
BPHYT_RS30795 -0.2
BPHYT_RS31385 +0.3
BPHYT_RS31405 N.D.
BPHYT_RS31610 +0.0
BPHYT_RS31900 -0.2
BPHYT_RS33140 N.D.
BPHYT_RS33705 -0.1
BPHYT_RS34945 N.D.
BPHYT_RS34965 N.D.
BPHYT_RS35505 -0.2
BPHYT_RS35675 -0.2
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxyhexadecanoyl-[acp]→a (2E)-hexadec-2-enoyl-[acp] + H2O (EC 4.2.1.59)
BPHYT_RS12085 N.D.
Enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) (in reverse):
a (2E)-hexadec-2-enoyl-[acp] + NADPH + H+→a palmitoyl-[acp] + NADP+ (EC 1.3.1.10; 1.3.1.104; 1.3.1.39)
BPHYT_RS32935 -0.0
Oleoyl-[acyl-carrier-protein] hydrolase:
a palmitoyl-[acp] + H2O→palmitate + a soluble [acyl-carrier protein] + H+ (EC 3.1.2.14)
No genes
Long-chain-fatty-acid--CoA ligase:
palmitate + ATP + coenzyme A→palmitoyl-CoA + AMP + diphosphate (EC 6.2.1.3)
BPHYT_RS08270 -0.2
BPHYT_RS17295 -0.1
BPHYT_RS19375 -0.1

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information