MetaCyc Pathway: Entner-Doudoroff pathway III (semi-phosphorylative) in Burkholderia phytofirmans PsJN

Reactions and Genes	D-Galactose (C)
Glucose 1-dehydrogenase (NADP(+)): D-glucopyranose + NADP+→D-glucono-1,5-lactone + NADPH + H+ (EC 1.1.1.119; 1.1.1.360)
BPHYT_RS35785	+0.3
Gluconolactonase: D-glucono-1,5-lactone + H2O→D-gluconate + H+ (spontaneous) (EC 3.1.1.17)
BPHYT_RS21245	-0.2
BPHYT_RS24170	+0.2
D-gluconate→2-dehydro-3-deoxy-D-gluconate + H2O (EC 4.2.1.140; 4.2.1.39)
BPHYT_RS09885	+0.4
BPHYT_RS16405	-2.6
2-dehydro-3-deoxy-D-gluconate + ATP→2-dehydro-3-deoxy-D-gluconate 6-phosphate + ADP + H+ (EC 2.7.1.178; 2.7.1.45)
BPHYT_RS09175	+0.0
BPHYT_RS11300	N.D.
2-dehydro-3-deoxy-phosphogluconate aldolase: 2-dehydro-3-deoxy-D-gluconate 6-phosphate→D-glyceraldehyde 3-phosphate + pyruvate (EC 4.1.2.14; 4.1.2.55)
BPHYT_RS16730	N.D.
D-glyceraldehyde 3-phosphate + NAD(P)+ + H2O→3-phospho-D-glycerate + NAD(P)H + 2 H+ (EC 1.2.1.90)
No genes
3-phospho-D-glycerate→2-phospho-D-glycerate (EC 5.4.2.12)
BPHYT_RS02590	-4.3
Phosphopyruvate hydratase: 2-phospho-D-glycerate→phosphoenolpyruvate + H2O (EC 4.2.1.11)
BPHYT_RS12675	N.D.
Pyruvate kinase (in reverse): phosphoenolpyruvate + ADP + H+→pyruvate + ATP (EC 2.7.1.40)
BPHYT_RS16265	+0.0

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information