MetaCyc Pathway: TCA cycle VIII (Chlamydia) in Pseudomonas fluorescens FW300-N2E3

Add experiment(s):


Reactions and Genes L-Ornithine
remove
2-oxoglutarate + coenzyme A + NAD+→succinyl-CoA + CO2 + NADH (EC 1.2.1.105)
AO353_19955 -0.3
Succinate--CoA ligase (ADP-forming) (in reverse):
succinyl-CoA + ADP + phosphate→succinate + ATP + coenzyme A (EC 6.2.1.5)
AO353_01815 N.D.
AO353_01820 N.D.
Succinate dehydrogenase (ubiquinone):
succinate[in] + an electron-transfer quinone→fumarate[in] + an electron-transfer quinol (EC 1.3.5.1)
AO353_01840 N.D.
AO353_01845 N.D.
AO353_01850 N.D.
Fumarate hydratase (in reverse):
fumarate + H2O→(S)-malate (EC 4.2.1.2)
AO353_02150 -0.1
AO353_03795 -0.8
Malate dehydrogenase:
(S)-malate + NAD+→oxaloacetate + NADH + H+ (EC 1.1.1.37; 1.1.1.38)
No genes
Aspartate transaminase (in reverse):
oxaloacetate + L-glutamate→2-oxoglutarate + L-aspartate (EC 2.6.1.1)
AO353_01120 +0.2
AO353_01210 -2.2
AO353_01655 -0.1
AO353_02295 +0.1
AO353_09180 +0.1
AO353_09990 -0.0
AO353_15915 -0.0
AO353_17700 +0.2
AO353_18575 +0.4
AO353_19150 +0.1
AO353_20995 -0.3
AO353_22840 +0.0
AO353_22920 +1.6
AO353_23080 +0.1
AO353_24850 -0.1
AO353_26890 +0.2
AO353_28150 +0.3
AO353_29325 -0.6

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information