MetaCyc Pathway: TCA cycle I (prokaryotic) in Burkholderia phytofirmans PsJN

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Reactions and Genes Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB
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2-oxoglutarate + coenzyme A + NAD+→succinyl-CoA + CO2 + NADH (EC 1.2.1.105)
No genes
Succinate--CoA ligase (ADP-forming) (in reverse):
succinyl-CoA + ADP + phosphate→succinate + ATP + coenzyme A (EC 6.2.1.5)
BPHYT_RS16340 -0.7
BPHYT_RS16345 -1.8
Succinate dehydrogenase (ubiquinone):
succinate[in] + an electron-transfer quinone→fumarate[in] + an electron-transfer quinol (EC 1.3.5.1)
BPHYT_RS33935 N.D.
Fumarate hydratase (in reverse):
fumarate + H2O→(S)-malate (EC 4.2.1.2)
BPHYT_RS06985 -1.5
BPHYT_RS14615 -0.4
Malate dehydrogenase:
(S)-malate + NAD+→oxaloacetate + NADH + H+ (EC 1.1.1.37; 1.1.1.38)
BPHYT_RS27110 -0.6
BPHYT_RS28460 +0.1
BPHYT_RS33955 N.D.
(S)-malate[in] + an electron-transfer quinone→oxaloacetate[in] + an electron-transfer quinol (EC 1.1.5.4)
No genes
Citrate (Si)-synthase:
oxaloacetate + acetyl-CoA + H2O→citrate + coenzyme A + H+ (EC 2.3.3.1; 2.3.3.16; 2.3.3.3)
BPHYT_RS15810 +0.3
BPHYT_RS19980 -0.4
BPHYT_RS20940 +0.0
BPHYT_RS27440 -0.2
BPHYT_RS33920 -1.9
Aconitate hydratase:
citrate→cis-aconitate + H2O (EC 4.2.1.3)
BPHYT_RS10160 -0.2
BPHYT_RS30145 -0.3
BPHYT_RS33980 -1.7
Aconitate hydratase:
cis-aconitate + H2O→D-threo-isocitrate (EC 4.2.1.3)
BPHYT_RS10160 -0.2
BPHYT_RS30145 -0.3
BPHYT_RS33980 -1.7
Isocitrate dehydrogenase (NADP(+)):
D-threo-isocitrate + NADP+→2-oxoglutarate + CO2 + NADPH (EC 1.1.1.42)
BPHYT_RS15730 -0.2
BPHYT_RS20300 N.D.

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information