MetaCyc Pathway: superpathway of tetrahydrofolate biosynthesis in Pseudomonas fluorescens FW300-N2E2

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Reactions and Genes Cobalt chloride 0.6 mM
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GTP cyclohydrolase I:
GTP + H2O→7,8-dihydroneopterin 3'-triphosphate + formate + H+
(EC 3.5.4.16)
Pf6N2E2_4262 +0.0
Pf6N2E2_5273 +0.5
Pf6N2E2_5815 N.D.
Aminodeoxychorismate synthase:
chorismate + L-glutamine→4-amino-4-deoxychorismate + L-glutamate
(EC 2.6.1.85)
Pf6N2E2_1718 +0.7
Pf6N2E2_4824 -0.2
Pf6N2E2_6001 -0.7
Pf6N2E2_6056 +0.3
Aminodeoxychorismate lyase:
4-amino-4-deoxychorismate→4-aminobenzoate + H+ + pyruvate
(EC 4.1.3.38)
Pf6N2E2_5955 -0.3
7,8-dihydroneopterin 3'-triphosphate + H2O→7,8-dihydroneopterin 3'-phosphate + diphosphate + H+ (EC 3.6.1.67)
No genes
7,8-dihydroneopterin 3'-phosphate + H2O→D-erythro-7,8-dihydroneopterin + phosphate
No genes
Dihydroneopterin aldolase:
D-erythro-7,8-dihydroneopterin→6-(hydroxymethyl)-7,8-dihydropterin + glycolaldehyde
(EC 4.1.2.25)
Pf6N2E2_4796 N.D.
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase:
6-(hydroxymethyl)-7,8-dihydropterin + ATP→(7,8-dihydropterin-6-yl)methyl diphosphate + AMP + H+
(EC 2.7.6.3)
Pf6N2E2_4797 -2.4
Pf6N2E2_5154 N.D.
Dihydropteroate synthase:
(7,8-dihydropterin-6-yl)methyl diphosphate + 4-aminobenzoate→7,8-dihydropteroate + diphosphate
(EC 2.5.1.15)
Pf6N2E2_3358 N.D.
Dihydrofolate synthase:
7,8-dihydropteroate + ATP + L-glutamate→7,8-dihydrofolate monoglutamate + ADP + H+ + phosphate
(EC 6.3.2.12)
Pf6N2E2_73 N.D.
Dihydrofolate reductase (in reverse):
a 7,8-dihydrofolate + NADPH + H+→a tetrahydrofolate + NADP+
(EC 1.5.1.3)
Pf6N2E2_4561 N.D.
Pf6N2E2_5274 +3.5

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information