MetaCyc Pathway: fatty acid β-oxidation I (generic) in Pseudomonas stutzeri RCH2

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Reactions and Genes L-tyrosine (C)
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a 2,3,4-saturated fatty acid + ATP + coenzyme A→a 2,3,4-saturated fatty acyl CoA + AMP + diphosphate
No genes
Dodecenoyl-CoA isomerase:
a (3Z)-3-enoyl-CoA→a (2E)-2-enoyl-CoA
(EC 5.3.3.8)
Psest_2654 N.D.
Psest_3969 +0.4
Psest_4235 -0.2
3-hydroxybutyryl-CoA epimerase:
a 2,3,4-saturated (3R)-3-hydroxyacyl-CoA→a 2,3,4-saturated (3S)-3-hydroxyacyl-CoA
(EC 5.1.2.3)
Psest_2654 N.D.
Psest_3969 +0.4
Psest_4235 -0.2
a 2,3,4-saturated fatty acyl CoA + an oxidized electron-transfer flavoprotein + H+→a (2E)-2-enoyl-CoA + a reduced electron-transfer flavoprotein
No genes
Enoyl-CoA hydratase (in reverse):
a (2E)-2-enoyl-CoA + H2O→a 2,3,4-saturated (3S)-3-hydroxyacyl-CoA
(EC 4.2.1.17)
Psest_2076 -0.1
Psest_2437 +0.9
Psest_2439 +1.0
Psest_2654 N.D.
Psest_2720 -0.6
Psest_3109 -0.0
Psest_3110 -0.3
Psest_3800 -0.4
Psest_3969 +0.4
Psest_4235 -0.2
3-hydroxyacyl-CoA dehydrogenase:
a 2,3,4-saturated (3S)-3-hydroxyacyl-CoA + NAD+→a 2,3,4-saturated 3-oxoacyl-CoA + NADH + H+
(EC 1.1.1.35)
Psest_2654 N.D.
Psest_3800 -0.4
Psest_3969 +0.4
Psest_4235 -0.2
Acetyl-CoA C-acyltransferase (in reverse):
a 2,3,4-saturated 3-oxoacyl-CoA + coenzyme A→a 2,3,4-saturated fatty acyl CoA + acetyl-CoA
(EC 2.3.1.16)
Psest_1076 -3.0
Psest_1829 -0.1
Psest_2446 +0.5
Psest_2476 +0.9
Psest_2653 N.D.
Psest_3070 -0.0

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information