MetaCyc Pathway: D-serine degradation in Bacteroides thetaiotaomicron VPI-5482
| Reactions and Genes | Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.025 mM |
|---|---|
| remove | |
| D-serine ammonia-lyase: D-serine→2-aminoprop-2-enoate + H2O (EC 4.3.1.18) | |
| No genes | |
| Tryptophanase: 2-aminoprop-2-enoate→2-iminopropanoate (spontaneous) (EC 4.1.99.1; 4.1.99.2; 4.3.1.13; 4.3.1.17; 4.3.1.18; 4.3.3.8; 4.4.1.1; 4.4.1.13; 4.4.1.15; 4.4.1.25; 4.4.1.28; 4.4.1.35; 4.5.1.2) | |
| BT1492 | -0.2 |
| BT4678 | +2.8 |
| 2-iminopropanoate + H2O→pyruvate + ammonium (spontaneous) (EC 3.5.99.10; 4.1.99.1; 4.1.99.2; 4.3.1.13; 4.3.1.17; 4.3.1.18; 4.3.3.8; 4.4.1.1; 4.4.1.13; 4.4.1.15; 4.4.1.25; 4.4.1.28; 4.4.1.35; 4.5.1.2) | |
| BT1336 | -1.1 |
| BT1492 | -0.2 |
| BT4678 | +2.8 |
Links:
- Pathway details at MetaCyc
- Fitness data for 3 genes
- All MetaCyc pathways for Bacteroides thetaiotaomicron VPI-5482
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information